Polycystic ovary syndrome (PCOS) is one of the most common endocrine disorders; it is characterized by polycystic ovaries, hyperandrogenism and chronic anovulation. To obtain a global view of those genes that might be involved in the development of this complex clinical disorder, we used recently developed cDNA microarray technology to compare differential gene expressions between normal human ovary and ovaries from PCOS patients. A total of 9216 clones randomly selected from a commercial human ovary cDNA library were screened. Among them, 290 clones showed differential expressions, including 119 known genes and 100 known or unknown expressed sequence tags (ESTs). Among 119 known genes, 88 were upregulated and 31 downregulated in the PCOS ovary, as compared with normal human ovary. These differentially expressed genes are involved in various biologic functions, such as cell division/apoptosis, regulation of gene expression and metabolism, reflecting the complexity of clinical manifestations of PCOS. The molecular characteristics established from our study will further our understanding of the pathogenesis of PCOS and help us to identify new targets for further studies and for the development of new therapeutic interventions.

The gymnosperm Welwitschia mirabilis belongs to the ancient, enigmatic gnetophyte lineage. It is a unique desert plant with extreme longevity and two ever-elongating leaves. We present a chromosome-level assembly of its genome (6.8 Gb/1 C) together with methylome and transcriptome data to explore its astonishing biology. We also present a refined, high-quality assembly of Gnetum montanum to enhance our understanding of gnetophyte genome evolution. The Welwitschia genome has been shaped by a lineage-specific ancient, whole genome duplication (~86 million years ago) and more recently (1-2 million years) by bursts of retrotransposon activity. High levels of cytosine methylation (particularly at CHH motifs) are associated with retrotransposons, whilst long-term deamination has resulted in an exceptionally GC-poor genome. Changes in copy number and/or expression of gene families and transcription factors (e.g. R2R3MYB, SAUR) controlling cell growth, differentiation and metabolism underpin the plant’s longevity and tolerance to temperature, nutrient and water stress.

Animals endemic to deep-sea hydrothermal vents often form obligatory symbioses with bacteria, maintained by intricate host–symbiont interactions. Most genomic studies on holobionts have not investigated both sides to similar depths. Here, we report dual symbiosis in the peltospirid snail Gigantopelta aegis with two gammaproteobacterial endosymbionts: a sulfur oxidiser and a methane oxidiser. We assemble high-quality genomes for all three parties, including a chromosome-level host genome. Hologenomic analyses reveal mutualism with nutritional complementarity and metabolic co-dependency, highly versatile in transporting and using chemical energy. Gigantopelta aegis likely remodels its immune system to facilitate dual symbiosis. Comparisons with Chrysomallon squamiferum, a confamilial snail with a single sulfur-oxidising gammaproteobacterial endosymbiont, show that their sulfur-oxidising endosymbionts are phylogenetically distant. This is consistent with previous findings that they evolved endosymbiosis convergently. Notably, the two sulfur-oxidisers share the same capabilities in biosynthesising nutrients lacking in the host genomes, potentially a key criterion in symbiont selection.

Biodiversity of hydrothermal vents in the Indian Ocean, particularly those on the Southwest Indian Ridge (SWIR), are still relatively poorly understood. The Tiancheng field on the SWIR was initially reported with only a low-temperature diffuse flow venting area, but here we report two new active areas, including a chimney emitting high-temperature vent fluids. Biological sampling in these new sites doubled the known megafauna and macrofauna richness reported from Tiancheng. Significantly, we found several iconic species, such as the scaly-foot snail and the first Alviniconcha population on the SWIR. Tiancheng shares a high proportion of taxa with vents on the Central Indian Ridge (CIR) and lacks a number of key taxa that characterize other vents investigated so far on the SWIR. Population genetics of the scaly-foot snail confirmed this, as the Tiancheng population was clustered with populations from the CIR, showing low connectivity with the Longqi field. Unlike the previously examined populations, scales of the Tiancheng scaly-foot snail were coated in zinc sulfide, although this results only from precipitation. The close connection between Tiancheng and CIR vents indicates that the dispersal barrier for vent endemic species is not the Rodriguez Triple Junction as previously suggested but the transformation faults between Tiancheng and Longqi, warranting further studies on deep currents in this area to resolve the key barrier, which has important implications for biological conservation.

A Gram-stain-negative, rod-shaped bacterium with appendages, designated Ar-22 T , was isolated from a seawater sample collected from the western part of Prydz Bay, near Cape Darnley, Antarctica. Strain T grew optimally at 35 6C, at pH 7.5 and in the presence of 1-3 % (w/v) NaCl. The isolate was positive for casein, gelatin and Tween 20 decomposition and negative for H 2 S production and indole formation. Chemotaxonomic analysis showed that MK-6 was the major isoprenoid quinone and phosphatidylethanolamine was the major polar lipid. The major fatty acids were iso-C 17 : 0 3-OH, iso-C 15 : 1 G, iso-C 15 : 0 and C 16 : 1 v7c/iso-C 15 : 0 2OH. et al., 2012). The members of the genus Muricauda are Gram-negative rods and possess yellow pigments. Some of them display long and relatively thick appendages. They were isolated from a salt lake, a coastal hot spring and marine environments, including intertidal sediment and tidal flat sediment as well as crudeoil-contaminated seawater. This study focuses on the description of a light-brown strain Ar-22 T that was isolated from an Antarctic seawater sample.The seawater sample was collected from the western part of Prydz Bay, near Cape Darnley, Antarctica (longitude 70 u 309 180 E, latitude 68 u 009 180 S, water depth 303 m) at a depth of 50 m during the 25th Chinese National Antarctic Research Expedition (2008)(2009). Aboard the ship, all samples were subsampled aseptically and stored at 4 u C until use. Approximately 100 ml seawater was spread on modified marine agar 2216 by using the standard ten-fold Abbreviations: GL, unidentified glycolipid; PE, phosphatidylethanolamine; PL, unidentified phospholipid.The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Muricauda antarctica T is JN166984.Five supplementary figures are available with the online version of this paper. The optimal conditions for growth were determined in MB with different NaCl concentrations (0, 0.5, 1.0, 3.0, 5.0, 7.5, 10.0, 12.0, 15.0 and 20.0 % as final concentration, w/v) (Yoon et al., 2008). The requirement for artificial sea-salt was evaluated in trypticase/soy broth (Difco) with the addition of 0, 0.5, 1, 2, 3, 5, 7, 9, 10, 11, 12 and 15 % (w/v) artificial sea-salt (Sigma) (Yoon et al., 2005;Arun et al., 2009).The pH range for growth was determined in MB that was adjusted to pH 5-10.5 (in 0.5 pH unit intervals) using appropriate biological buffers (MES for pH 5.0-6.0, PIPES for pH 6.5-7.0, Tricine for pH 7.5-8.5 and CAPSO for pH 9.0-10.5) at a concentration of 50 mM. The temperature range for growth was determined by incubation at 4, 10, 15, 20, 25, 30, 35, 37, 40, 45 and 50 u C. Cell motility and morphology were examined using optical microscopy (BX40, Olympus) and electron microscopy (S260, Cambridge; JEM-1230, JEOL).Growth under anaerobic conditions was determined after incubation in an anaerobic chamber (N 2 /CO 2 /H 2 , 80 : 10 : 10) with MA and MA supplemented with nitrate. The bathochromic shift test was performed to detect flexirubin-type pigments (Fautz & Reichenb...

Alvinellids have long been considered to be endemic to Pacific vents until recent discovery of their presence in the Indian Ocean. Here, a new alvinellid is characterized and formally named from recently discovered vents, Wocan, and Daxi, in the northern Indian Ocean. Both morphological and molecular evidences support its placement in the genus Paralvinella, representing the first characterized alvinellid species out of the Pacific. The new species, formally described as Paralvinella mira n. sp. herein, is morphologically most similar to Paralvinella hessleri from the northwest Pacific, but the two species differ in three aspects: (1), the first three chaetigers are not fused in P. mira n. sp., whereas fused in P. hessleri; (2), paired buccal tentacles short and pointed in P. mira but large and strongly pointed in P. hessleri; (3), numerous slender oral tentacles ungrouped in P. mira but two groups in P. hessleri. Phylogenetic inference using the concatenated alignments of the cytochrome c oxidase I (COI), 16S rRNA and 18S rRNA genes strongly supports the clustering of P. mira with two West Pacific congeners, P. hessleri and an undescribed species (Paralvinella sp. ZMBN). The resulting Indian/West Pacific lineage suggests a possible invasion into the Indian Ocean from the West Pacific. This is the third polychaete reported from Wocan hydrothermal field. Among the three species, two including P. mira and Hesiolyra heteropoda (Annelida:Hesionidae) are present in high abundance, forming an alvinellids/hesionids-dominated polychaete assemblage distinct from that at all other Central Indian Ridge and Southwest Indian Ridge vents. Thus, this study expands our understanding of alvinellid biogeography beyond the Pacific, and adds to the unique biodiversity of the northern Indian Ocean vents, with implications for biogeographic subdivision across the Indian Ocean ridges.

Background Gonad development and differentiation is an essential function for all sexually reproducing species, and many aspects of these developmental processes are highly conserved among the metazoa. However, the mechanisms underlying gonad development and gametogenesis remain unclear in Tridacna squamosa, a large-size bivalve of great ecological value. They are protandrous simultaneous hermaphrodites, with the male gonad maturing first, eventually followed by the female gonads. In this study, nine gonad libraries representing resting, male and hermaphrodite stages in T. squamosa were performed to identify the molecular mechanisms. Results Sixteen thousand four hundred ninety-one unigenes were annotated in the NCBI non-redundant protein database. Among the annotated unigenes, 5091 and 7328 unigenes were assigned to Gene Ontology categories and the Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway database, respectively. A total of 4763 differentially expressed genes (DEGs) were identified by comparing male to resting gonads, consisting of 3499 which were comparatively upregulated in males and 1264 which were downregulated in males. Six hundred-ninteen DEGs between male and hermaphroditic gonads were identified, with 518 DEGs more strongly expressed in hermaphrodites and 101 more strongly expressed in males. GO (Gene Ontology) and KEGG pathway analyses revealed that various biological functions and processes, including functions related to the endocrine system, oocyte meiosis, carbon metabolism, and the cell cycle, were involved in regulating gonadal development and gametogenesis in T. squamosa. Testis-specific serine/threonine kinases 1 (TSSK1), TSSK4, TSSK5, Doublesex- and mab-3-related transcription factor 1 (DMRT1), SOX, Sperm surface protein 17 (SP17) and other genes were involved in male gonadal development in Tridacna squamosal. Both spermatogenesis- (TSSK4, spermatogenesis-associated protein 17, spermatogenesis-associated protein 8, sperm motility kinase X, SP17) and oogenesis-related genes (zona pellucida protein, Forkhead Box L2, Vitellogenin, Vitellogenin receptor, 5-hydroxytryptamine, 5-hydroxytryptamine receptor) were simultaneously highly expressed in the hermaphroditic gonad to maintain the hermaphroditism of T. squamosa. Conclusion All these results from our study will facilitate better understanding of the molecular mechanisms underlying giant clam gonad development and gametogenesis, which can provided a base on obtaining excellent gametes during the seed production process for giant clams.

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