Fatty acid profiles and carbon (δ13C) and nitrogen (δ15N) stable isotope markers were used to identify the diet of amphioxus in subtropical Hong Kong waters, and to evaluate the role of co-occurring Branchiostoma belcheri and B. malayanum in trophic transfer, in coastal ecosystems. The present results showed that while amphioxus is generally regarded as a filter feeder, total particulate matter in the water column might not be the main food supply. The diet of amphioxus could be traced to comprise a wide range of food sources, from microbes and microplankton to microalgae, based on the stable isotope analysis. Results of fatty acid profile analysis also revealed contributions from dinoflagellates, zooplankton, detritus and bacteria, and minor contribution from diatoms and fungi in the diet of amphioxus in Hong Kong waters. The use of fatty acid and stable isotope analyses further proved that amphioxus can, not only capture and partition such a different size-range of food particles during their feeding, but also assimilate most of them into their body tissue. The present findings suggested that amphioxus may play an important role in marine food webs by transferring microbial production to higher trophic levels through utilizing microbes in seawater as food.

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