Data Repository of Antimicrobial Peptides (DRAMP,
http://dramp.cpu-bioinfor.org/
) is an open-access comprehensive database containing general, patent and clinical antimicrobial peptides (AMPs). Currently DRAMP has been updated to version 2.0, it contains a total of 19,899 entries (newly added 2,550 entries), including 5,084 general entries, 14,739 patent entries, and 76 clinical entries. The update covers new entries, structures, annotations, classifications and downloads. Compared with APD and CAMP, DRAMP contains 14,040 (70.56% in DRAMP) non-overlapping sequences. In order to facilitate users to trace original references, PubMed_ID of references have been contained in activity information. The data of DRAMP can be downloaded by dataset and activity, and the website source code is also available on dedicatedly designed download webpage. Although thousands of AMPs have been reported, only a few parts have entered clinical stage. In the paper, we described several AMPs in clinical trials, including their properties, indications and clinicaltrials.gov identifiers. Finally, we provide the applications of DRAMP in the development of AMPs.
Stapled antimicrobial peptides are an emerging class of artificial cyclic peptide molecules which have antimicrobial activity and potent structure stability. We previously published the Data Repository of Antimicrobial Peptides (DRAMP) as a manually annotated and open-access database of antimicrobial peptides (AMPs). In the update of version 3.0, special emphasis was placed on the new development of stapled AMPs, and a subclass of specific AMPs was added to store information on these special chemically modified AMPs. To help design low toxicity AMPs, we also added the cytotoxicity property of AMPs, as well as the expansion of newly discovered AMP data. At present, DRAMP has been expanded and contains 22259 entries (2360 newly added), consisting of 5891 general entries, 16110 patent entries, 77 clinical entries and 181 stapled AMPs. A total of 263 entries have predicted structures, and more than 300 general entries have links to experimentally determined structures in the Protein Data Bank. The update also covers new annotations, statistics, categories, functions and download links. DRAMP is available online at http://dramp.cpu-bioinfor.org/.
The IceCube Neutrino Observatory at the South Pole has measured the diffuse astrophysical neutrino flux up to ∼PeV energies and is starting to identify first point source candidates. The next generation facility, IceCube-Gen2, aims at extending the accessible energy range to EeV in order to measure the continuation of the astrophysical spectrum, to identify neutrino sources, and to search for a cosmogenic neutrino flux. As part of IceCube-Gen2, a radio array is foreseen that is sensitive to detect Askaryan emission of neutrinos beyond ∼30 PeV. Surface and deep antenna stations have different benefits in terms of effective area, resolution, and the capability to reject backgrounds from cosmic-ray air showers and may be combined to reach the best sensitivity. The optimal detector configuration is still to be identified. This contribution presents the full-array simulation efforts for a combination of deep and surface antennas, and compares different design options with respect to their sensitivity to fulfill the science goals of IceCube-Gen2.
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