As one of the most malignant cancer, hepatocellular carcinoma (HCC) has a complex ecosystem featured by high heterogeneity. Cell crosstalk is demonstrated to be critical for HCC development. However, the cell communication orchestration in HCC remains largely unknown. Here, by analyzing the single-cell transcriptomes of the primary tumor tissues (n = 10) and tumor-adjacent tissues (n = 8) derived from 10 patients with HCC, we found that the proportions of plasmacytoid dendritic cells (pDCs) and natural killer (NK) cells were reduced and that the proportion of macrophages was increased in the immune component of the primary tumor, compared with those in the tumor-adjacent tissue. Furthermore, we found widespread communication between macrophage populations and other cell types, and this communication was remarkably strengthened in the primary tumor, especially with HCC malignant cells. In addition, the SPP1–CD44 axis was identified as a unique interaction between macrophages and HCC malignant cells. Our comprehensive portrait of cell communication patterns over the HCC ecosystem reveals further insights into immune infiltration.
Mining high utility patterns in dynamic databases is an important data mining task. While a naive approach is to mine a newly updated database in its entirety, the state-of-the-art mining algorithms all take an incremental approach. However, the existing incremental algorithms either take a two-phase paradigm that generates a large number of candidates that causes scalability issues or employ a vertical data structure that incurs a large number of join operations that leads to efficiency issues. To address the challenges with the existing incremental algorithms, this paper proposes a new algorithm incremental direct discovery of high utility patterns (Id 2 HUP+). Id 2 HUP+ adapts a one-phase paradigm by improving the relevance-based pruning and upper-bound-based pruning proposes a novel data structure for a quick update of dynamic databases and proposes the absence-based pruning and legacy-based pruning dedicated to incremental mining. The extensive experiments show that our algorithm is up to 1-3 orders of magnitude more efficient than the state-of-the-art algorithms, and is the most scalable algorithm. INDEX TERMS Data mining, utility mining, high utility patterns, pattern mining, dynamic databases.
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