Viviparous (live-bearing) vertebrates have evolved repeatedly within otherwise oviparous (egg-laying) clades. Over two-thirds of these changes in vertebrate reproductive parity mode happened in squamate reptiles, where the transition has happened between 98 and 129 times. The transition from oviparity to viviparity requires numerous physiological, morphological, and immunological changes to the female reproductive tract, including eggshell reduction, delayed oviposition, placental development for supply of water and nutrition to the embryo by the mother, enhanced gas exchange, and suppression of maternal immune rejection of the embryo. We performed genomic and transcriptomic analyses of a closely related oviparous–viviparous pair of lizards (Phrynocephalus przewalskii and Phrynocephalus vlangalii) to examine these transitions. Expression patterns of maternal oviduct through reproductive development of the egg and embryo differ markedly between the two species. We found changes in expression patterns of appropriate genes that account for each of the major aspects of the oviparity to viviparity transition. In addition, we compared the gene sequences in transcriptomes of four oviparous–viviparous pairs of lizards in different genera (Phrynocephalus, Eremias, Scincella, and Sphenomorphus) to look for possible gene convergence at the sequence level. We discovered low levels of convergence in both amino acid replacement and evolutionary rate shift. This suggests that most of the changes that produce the oviparity–viviparity transition are changes in gene expression, so occasional reversals to oviparity from viviparity may not be as difficult to achieve as has been previously suggested.

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The vulnerable Chinese cobra (Naja atra) ranges from southeastern China south of the Yangtze River to northern Vietnam and Laos. Large mountain ranges and water bodies may influence the pattern of genetic diversity of this species. We sequenced the mitochondrial DNA control region (1029 bp) using 285 individuals collected from 23 localities across the species' range and obtained 18 sequences unique to Taiwan from GenBank for phylogenetic and population analysis. Two distinct clades were identified, one including haplotypes from the two westernmost localities (Hekou and Miyi) and the other including haplotypes from all sampling sites except Miyi. A strong population structure was found (Φst = 0.76, P<0.0001) with high haplotype diversity (h = 1.00) and low nucleotide diversity (π = 0.0049). The Luoxiao and Nanling Mountains act as historical geographical barriers limiting gene exchange. In the haplotype network there were two “star” clusters. Haplotypes from populations east of the Luoxiao Mountains were represented within one cluster and haplotypes from populations west of the mountain range within the other, with haplotypes from populations south of the Nanling Mountains in between. Lineage sorting between mainland and island populations is incomplete. It remains unknown as to how much adaptive differentiation there is between population groups or within each group. We caution against long-distance transfers within any group, especially when environmental differences are apparent.

Studies on the highly pathogenic avian influenza (HPAI) H5N1 suggest that wild bird migration may facilitate its long‐distance spread, yet the role of wild bird community composition in its transmission risk remains poorly understood. Furthermore, most studies on the diversity–disease relationship focused on host species diversity without considering hosts’ phylogenetic relationships, which may lead to rejecting a species diversity effect when the community has host species that are only distantly related. Here, we explored the influence of waterbird community composition for determining HPAI H5N1 occurrence in wild birds in a continental‐scale study across Europe. In particular, we tested the diversity–disease relationship using both host species diversity and host phylogenetic diversity. Our results provide the first demonstration that host community composition—compared with previously identified environmental risk factors—can also effectively explain the spatial pattern of H5N1 occurrence in wild birds. We further show that communities with more higher risk host species and more closely related species have a higher risk of H5N1 outbreaks. Thus, both host species diversity and community phylogenetic structure, in addition to environmental factors, jointly influence H5N1 occurrence. Our work not only extends the current theory on the diversity–disease relationship, but also has important implications for future monitoring of H5N1 and other HPAI subtypes.

Mitochondrial DNA phylogeography reveals a west-east division of the northern grass lizard (Takydromus septentrionalis) endemic to China Abstract We sequenced partial mitochondrial DNA from the cytochrome b gene (1143 bps) for 385 northern grass lizards (Takydromus septentrionalis) from 14 mainland and 14 island populations covering almost the lizardÕs entire range to examine the influence of geographic barriers (mountain ranges and water bodies) on the diversification of lineages. Phylogenetic analyses revealed a detailed distribution of three evolutionary lineages (W, E and G). Lineage G included individuals exclusively from Guiyang, in the south-western distributional limit. Lineage W included individuals from the central and western parts of the lizardÕs range on the mainland. Lineage E included individuals from East China, both on the mainland and on islands in the East China Sea. Haplotypes from lineages W and E were co-distributed in Chuzhou and Chibi. The averaged pairwise distance of 6.23% between these lineages indicated a Miocene-Pliocene lineage-split. Lineage E was further subdivided to three sublineages: E1 and E2 comprised of haplotypes from the Zhoushan Islands, and E3 included haplotypes from the eastern mainland, the Zhoushan Islands and two islands south of the Zhoushan Islands. Lineages W and E showed evidence of demographic extensions. The isolation caused by the last transgression (0.01 Ma) has not yet led to a significant genetic differentiation between mainland and island populations in East China. However, divergence among some small islands may be driven by the restriction of migration and genetic drift.

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An understanding of population structure and genetic diversity is crucial for wildlife conservation and for determining the integrity of wildlife populations. The vulnerable Chinese cobra (Naja atra) has a distribution from the mouth of the Yangtze River down to northern Vietnam and Laos, within which several large mountain ranges and water bodies may influence population structure. We combined 12 microsatellite loci and 1117 bp of the mitochondrial cytochrome b gene to explore genetic structure and demographic history in this species, using 269 individuals from various localities in Mainland China and Vietnam. High levels of genetic variation were identified for both mtDNA and microsatellites. mtDNA data revealed two main (Vietnam + southern China + southwestern China; eastern + southeastern China) and one minor (comprising only two individuals from the westernmost site) clades. Microsatellite data divided the eastern + southeastern China clade further into two genetic clusters, which include individuals from the eastern and southeastern regions, respectively. The Luoxiao and Nanling Mountains may be important barriers affecting the diversification of lineages. In the haplotype network of cytchrome b, many haplotypes were represented within a “star” cluster and this and other tests suggest recent expansion. However, microsatellite analyses did not yield strong evidence for a recent bottleneck for any population or genetic cluster. The three main clusters identified here should be considered as independent management units for conservation purposes. The release of Chinese cobras into the wild should cease unless their origin can be determined, and this will avoid problems arising from unnatural homogenization.

A new viviparous species of Phrynocephalus from Guinan, Qinghai, China, is described. Phrynocephalus guinanensis sp. nov., differs from all congeners in the following combination of characters: body large and relatively robust; dorsal ground color of head, neck, trunk, limbs and tail brown with weak light brown mottling; lateral ground color of head, neck, trunk and tail light black with weak white-gray mottling in adult males, and green with weak white-gray mottling in adult females; ventral ground color of tail white-gray to black in the distal part of the tail in adult males, and totally white-gray in adult females; ventral surfaces of hind-limbs white-gray; ventral surfaces of fore-limbs brick-red in adult males, and white-gray in adult females; ventral ground color of trunk and head black in the center but, in the periphery, brick-red in adult males and white-gray in adult females. Phrynocephalus guinanensis sp. nov. typically uses desert habitats, whereas P. vlangalii, a species closely related to the new form, uses a variety of arid and semi-arid habitats. It is the nineteenth species of Phrynocephalus recorded from China.