A family of segmented all-electron relativistically contracted (SARC) basis sets for the elements Hf-Hg is constructed for use in conjunction with the Douglas-Kroll-Hess (DKH) and zeroth-order regular approximation (ZORA) scalar relativistic Hamiltonians. The SARC basis sets are loosely contracted and thus offer computational advantages compared to generally contracted relativistic basis sets, while their sufficiently small size allows them to be used in place of effective core potentials (ECPs) for routine studies of molecules. Practical assessments of the SARC basis sets in DFT calculations of atomic (ionization energies) as well as molecular properties (geometries and bond dissociation energies for MHn complexes) confirm that the basis sets yield accurate and reliable results, providing a balanced description of core and valence electron densities. CCSD(T) calculations on a series of gold diatomic compounds also demonstrate the applicability of the basis sets to correlated methods. The SARC basis sets will be of most utility in calculating molecular properties for which the core electrons cannot be neglected, such as studies of electron paramagnetic resonance, Mössbauer and X-ray absorption spectra, and topological analysis of electron densities.
The geometric and electronic structures of 5d transition metal “impurities” Hf to Hg encapsulated in icosahedral and cuboctahedral Au12 cages have been investigated theoretically. The best density functional results of the small molecules Au2, AuH, AuCl, and AuCu were obtained for the geometric structures with Xα, and for the electronic energies of those frozen structures with VBP. The same procedure was then applied to the clusters. At the zeroth order regular relativistic approximation ZORA, both at the spin-averaged scalar and at the spin−orbit-split spinor levels, the cuboctahedral clusters tend to be more stable than their icosahedral isomers, except for W@Au12. The neutral clusters have electronic closed shells only for I h and O h W@Au12 and for O h Hg@Au12. The embedding energy of M into Au12 is less attractive for the later transition metal atoms M.
The responses of five transgenic tomato (Lycopersicon esculentum Mill) lines containing the betaine aldehyde dehydrogenase (BADH) gene to salt stress were evaluated. Proline, betaine (N, N, N-trimethylglycine, hereafter betaine), chlorophyll and ion contents, BADH activity, electrolyte leakage (EL), and some growth parameters of the plants under 1.0% and 1.5% NaCl treatments were examined. The transgenic tomatoes had enhanced BADH activity and betaine content, compared to the wild type under stress conditions. Salt stress reduced chlorophyll contents to a higher extent in the wild type than in the transgenic plants. The wild type exhibited significantly higher proline content than the transgenic plants at 0.9% and 1.3% NaCl. Cell membrane of the wild type was severely damaged as determined by higher EL under salinity stress. K + and Ca 2+ contents of all tested lines decreased under salt stress, but the transgenic plants showed a significantly higher accumulation of K + and Ca 2+ than the wild type. In contrast, the wild type had significantly higher Cl -and Na + contents than the transgenic plants under salt stress. Although yield reduction among various lines varied, the wild type had the highest yield reduction. Fruit quality of the transgenic plants was better in comparison with the wild type as shown by a low ratio of blossom end rot fruits. The results show that the transgenic plants have improved salt tolerance over the wild type.
To explore the details of the reaction mechanisms of Zr atoms with acetonitrile molecules, the triplet and singlet spin-state potential energy surfaces have been investigated. Density functional theory (DFT) with the relativistic zero-order regular approximation at the PW91/TZ2P level has been applied. The complicated minimum energy reaction path involves four transition states (TS), stationary states 1-5 and one spin inversion (indicated by ⇒): (3)Zr + NCCH(3) → (3)Zr-η(1)-NCCH(3) ((3)1) → (3)TS(1/2) → (3)Zr-η(2)-(NC)CH(3) ((3)2) → (3)TS(2/3) → (3)ZrH-η(3)-(NCCH(2)) ((3)3) → (3)TS(3/4) → CNZrCH(3) ((3)4) ⇒ (1)TS(4/5) → CN(ZrH)CH(2) ((1)5). The minimum energy crossing point was determined with the help of the DFT fractional-occupation-number approach. The spin inversion leading from the triplet to the singlet state facilitates the activation of a C-H bond, lowering the rearrangement-barrier by 78 kJ/mol. The overall reaction is calculated to be exothermic by about 296 kJ/mol. All intermediate and product species were frequency and NBO analyzed. The species can be rationalized with the help of Lewis type formulas.
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