Extracellular polymeric substances (EPS) are ubiquitous on tidal flats but their impact on sediment erosion has not been fully understood. Laboratory-controlled sediment beds were incubated with Bacillus subtilis for 5, 10, 16, and 22 days before the erosion experiments, to study the temporal and spatial variations in sediment stability caused by the bacterial secreted EPS. We found the biosedimentary systems showed different erosional behavior related to biofilm maturity and EPS distribution. In the first stage (5 days), the biosedimentary bed was more easily eroded than the clean sediment. With increasing growth period, bound EPS became more widely distributed over the vertical profile resulting in bed stabilization. After 22 days, the bound EPS was highly concentrated within a surface biofilm, but a relatively high content also extended to a depth of 5 mm and then decayed sharply with depth. The biofilm increased the critical shear stress of the bed and furthermore, it enabled the bed to withstand threshold conditions for an increased period of time as the biofilm degraded before eroding. After the loss of biofilm protection, the high EPS content in the sublayers continued to stabilize the sediment (hindered erosion) by binding individual grains, as visualized by electron microscopy. Consequently, the bed strength did not immediately revert to the abiotic condition but progressively adjusted, reflecting the depth profile of the EPS. Our experiments highlight the need to treat the EPS-sediment conditioning as a bed-age associated and depth-dependent variable that should be included in the next generation of sediment transport models. Plain Language Summary Sedimentology and geomorphology have traditionally been seen as fields in which physical and chemical processes dominate. However, microbial communities should never be bystanders, because they suffuse all sedimentary environments on earth. Under hydrodynamic forces, they take part in an impressive range of sediment processes and thus exercising a formative influence on coastal evolutions. Bio-sediments exhibit more complex characteristics than abiotic systems, and lead to different modelling methods compared to those in traditional settings. For instance, the thresholds for sediment initiation and subsequent erosion rates are no longer solely related to particle properties (e.g., particle size, the most widely used), but mediated by glue-like extracellular polymeric substances (EPS) secreted by microbes. From this point of view, it is easy to understand why sediments in field observations behave differently from predictions, usually appearing considerably strengthened. Our results indicate that the EPS mediation in sediment stability may vary with the rhythms of microbial growth, and re-profile the sediment stability during different stages of cementing processes. A conceptual framework for sediment erosion is hence put forward to transform traditional sediment system to EPS-sediment system.

Biofilms, consisting of microorganisms and their secreted extracellular polymeric substances (EPSs), serve as “ecosystem engineers” stabilizing sedimentary environments. Natural sediment bed provides an excellent substratum for biofilm growth. The porous structure and rich nutrients allow the EPS matrix to spread deeper into the bed. A series of laboratory‐controlled experiments were conducted to investigate sediment colonization of Bacillus subtilis and the penetration of EPS into the sediment bed with incubation time. In addition to EPS accumulation on the bed surface, EPS also penetrated downward. However, EPS distribution developed strong vertical heterogeneity with a much higher content in the surface layer than in the bottom layer. Scanning electron microscope images of vertical layers also displayed different micromorphological properties of sediment‐EPS matrix. In addition, colloidal and bound EPSs exhibited distinctive distribution patterns. After the full incubation, the biosedimentary beds were eroded to test the variation of bed stability induced by biological effects. This research provides an important reference for the prediction of sediment transport and hence deepens the understanding of the biologically mediated sediment system and broadens the scope of the burgeoning research field of “biomorphodynamics.”