X-ray crystallography and nuclear magnetic resonance measurements provide us with atomically resolved structures of an ever-growing number of biomolecules. These static structural snapshots are important to our understanding of biomolecular function, but real biomolecules are dynamic entities that often exploit conformational changes and transient molecular interactions to perform their tasks. Nuclear magnetic resonance methods can follow such structural changes, but only on millisecond timescales under non-equilibrium conditions. Time-resolved X-ray crystallography has recently been used to monitor the photodissociation of CO from myoglobin on a subnanosecond timescale, yet remains challenging to apply more widely. In contrast, two-dimensional infrared spectroscopy, which maps vibrational coupling between molecular groups and hence their relative positions and orientations, is now routinely used to study equilibrium processes on picosecond timescales. Here we show that the extension of this method into the non-equilibrium regime allows us to observe in real time in a short peptide the weakening of an intramolecular hydrogen bond and concomitant opening of a beta-turn. We find that the rate of this process is two orders of magnitude faster than the 'folding speed limit' established for contact formation between protein side chains.

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Arynes, which are formally derived from aromatic rings by abstraction of two hydrogen atoms, have been a focus of organic chemistry for 100 years. In contrast to ortho-benzyne, which is mentioned in almost every introductory textbook on organic reaction mechanisms as a reactive intermediate of nucleophilic aromatic substitution, the meta and para isomers were regarded as rather exotic until recently. This situation has changed dramatically with the discovery of the enediyne antibiotics, a promising new class of antitumor drugs, and has aroused the interest of research groups from all branches of chemistry. Nowadays, arynes and related compounds are among the most intensively studied systems in chemistry. However, many aspects of the chemistry of these reactive intermediates are not well understood yet. In this review we outline the historical developement with an emphasis on recent progress in this challenging field of research.

Angeles, and returned to the University of Heidelberg in 1984. After completing his Habilitation in 1989, he joined the Institute of Organic Chemistry at the University of Braunschweig as Associate Professor, and since 1993 he has been Full Professor of Chemistry at the University of Bochum. His research interest in the field of physical organic chemistry is the characterization of reactive intermediates using matrix isolation spectroscopy and time-resolved techniques.

Over the last few years new experimental and theoretical methods have made it possible to gain a more detailed insight into the chemistry of short-lived reaction intermediates. In 1949 Criegee postulated the intermediacy of carbonyl oxides in the mechanism of ozonolysis, and since then these species have become the goal of much research effort. Even though the formation of "Criegee zwitterions" during ozonolysis and carbene oxidations was proven by scavenger experiments, the electronic structure -zwitterion or diradical--of this short-lived species is still a subject of debate. To date n o stable carbonyl oxide has been found to exist under "normal" laboratory conditions, although by using matrix isolation and laser spectroscopy, it has been possible to obtain highly resolved IR and UVjVIS spectra of carbonyl oxides as well as to determine their dipole moments experimentally. The influence of substituents, exact kinetic data on modes of formation, and the subsequent reactions of carbonyl oxides as well as their photochemistry complete the picture. In accordance with a b initio calculations carbonyl oxides are best viewed as polar diradicals. The zwitterionic state lies at higher energies and should be stabilized by R donors.

Spin specificity is one of the most important properties of carbenes in their reactions. Alcohols are typically used to probe the reactive spin states of carbenes: O-H insertions are assumed to be characteristic of singlet states, whereas C-H insertions are typical for the triplets. Surprisingly, the experiments presented here suggest that the spin ground state of diphenylcarbene 1 switches from triplet to singlet if the carbene is allowed to interact with methanol. Carbene 1 and methanol form a strongly hydrogen-bonded singlet ground state complex that was synthesized in low-temperature matrices and characterized by IR spectroscopy. This methanol complex is only metastable, and even at 3 K slowly rearranges to form the product of O-H insertion through quantum chemical tunneling. Thus, the ground state triplet (in the gas phase) carbene 1 forms exclusively the products expected from a singlet carbene. Whereas the assumption of spin specific reactions of carbenes is correct, the spin state itself can be changed by solvent interactions, and therefore widely accepted conclusions drawn from earlier experiments have to be revisited.

The three-dimensional structure of a peptide is strongly influenced by its solvent environment. In the present study, we study three cyclic tetrapeptides which serve as model peptides for β-turns. They are of the general structure cyclo(Boc-Cys-Pro-X-Cys-OMe) with the amino acid X being either glycine (1), or L- or D-leucine (L- or D-2). Using vibrational circular dichroism (VCD) spectroscopy, we confirm previous NMR results which showed that D-2 adopts predominantly a βII turn structure in apolar and polar solvents. Our results for L-2 indicate a preference for a βI structure over βII. With increasing solvent polarity, the preference for 1 is shifted from βII towards βI. This conformational change goes along with the breaking of an intramolecular hydrogen bond which stabilizes the βII conformation. Instead, a hydrogen bond with a solvent molecule can stabilize the βI turn conformation.

The dimerization of formamide (FMA) has been investigated by matrix isolation spectroscopy, static ab initio calculations, and ab initio molecular dynamics (AIMD) simulations. Comparison of the experimental matrix IR spectra with the ab initio calculations reveals that two types of dimers A and C are predominantly formed, with two and one strong NH...O hydrogen bonds, respectively. This is in accordance with previously published experiments. In addition, there is also experimental evidence for the formation of the thermally labile dimer B after deposition of high concentrations of FMA in solid xenon. The AIMD simulations of the aggregation process show that in all cases dimer C is initially formed, but rearrangement to the more stable doubly hydrogen-bonded structures A or B occurs for a fraction of collisions on the sub-picosecond time scale.