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Accessing and utilizing enterprise or Web data that is scattered across multiple data sources is an important task for both applications and users. Ontology-based data integration, where an ontology mediates between the raw data and its consumers, is a promising approach to facilitate such scenarios. This approach crucially relies on useful mappings to relate the ontology and the data, the latter being typically stored in relational databases. A number of systems to support the construction of such mappings have recently been developed. A generic and effective benchmark for reliable and comparable evaluation of the practical utility of such systems would make an important contribution to the development of ontology-based data integration systems and their application in practice. We have proposed such a benchmark, called RODI. In this paper, we present a new version of RODI, which significantly extends our previous benchmark, and we evaluate various systems with it. RODI includes test scenarios from the domains of scientific conferences, geographical data, and oil and gas exploration. Scenarios are constituted of databases, ontologies, and queries to test expected results. Systems that compute relational-to-ontology mappings can be evaluated using RODI by checking how well they can handle various features of relational schemas and ontologies, and how well the computed mappings work for query answering. Using RODI, we conducted a comprehensive evaluation of seven systems.

We define XPathLog as a Datalog-style extension of XPath. XPathLog provides a clear, declarative language for querying and manipulating XML whose perspectives are especially in XML data integration.In our characterization, the formal semantics is defined wrt. an edge-labeled graph-based model which covers the XML data model. We give a complete, logic-based characterization of XML data and the main language concept for XML, XPath. XPath-Logic extends the XPath language with variable bindings and embeds it into first-order logic. XPathLog is then the Horn fragment of XPath-Logic, providing a Datalog-style, rule-based language for querying and manipulating XML data. The model-theoretic semantics of XPath-Logic serves as the base of XPathLog as a logic-programming language, whereas also an equivalent answer-set semantics for evaluating XPathLog queries is given. In contrast to other approaches, the XPath syntax and semantics is also used for a declarative specification how the database should be updated : when used in rule heads, XPath filters are interpreted as specifications of elements and properties which should be added to the database.

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The cerebellum is involved in the control of motor functions with Purkinje cells serving as the only output from the cerebellum. Purkinje cells are important targets for toxic substances and are vulnerable to prenatal insults. Intrauterine infection (IUI) has been shown to selectively target the developing cerebral white matter through lesioning, necrosis and inflammatory cytokine activation. Developmental and cognitive delays have been associated with animal models of IUI. The aim of this study was to determine if IUI leads to damage to Purkinje cells in the developing cerebellum and if any damage is associated with decreases in calbindin and motor behaviors in surviving pups. Pregnant rats were injected with Escherichia coli (1 × 10⁵ colony-forming units) or sterile saline at gestational day 17. Beginning at postnatal day (PND) 2, the pups were subjected to a series of developmental tests to examine developmental milestones. At PND 16, some pups were sacrificed and their brains extracted and processed for histology or protein studies. Hematoxylin and eosin (HE) staining was done to examine the general morphology of the Purkinje cells and to examine Purkinje cell density, area and volume. Calbindin expression was examined in the cerebellum via immunohistochemistry and Western blot techniques. The remaining rat pups were used to examine motor coordination and balance on a rotating rotarod at the prepubertal and adult ages. Prenatal E. coli injection did not significantly change birth weight or delivery time, but did delay surface righting and negative geotaxis in pups. Pups in the E. coli group also had a decrease in the number of Purkinje cells, as well as a decrease in Purkinje cell density and volume. HE staining demonstrated a change in Purkinje cell morphology. Calbindin expression was decreased in rats from the E. coli group as well. Locomotor tests indicated that while there were no significant changes in gross motor activity, motor coordination and balance was impaired in both prepubertal and adult rats from the E. coli group. In this model of IUI, we observed changes in Purkinje cell development which were associated with alterations in cerebellum-dependent motor behaviors. The decreases in calbindin and Purkinje cells were associated with developmental delays. These data further support the importance of IUI in brain development.