A taxonomic re-evaluation of the status of the North Pacific Squalus suckleyi (Girard, 1854) combining the use of meristic, morphological and molecular data reveal this species to be clearly distinct from the widespread Squalus acanthias (Linneaus, 1758). Differences in the external morphology between S. acanthias and S. suckleyi are subtle and are likely to be masked by intraspecific variation within individuals. However, we found S. suckleyi to differ from S. acanthias based on the following morphological and meristic characteristics: a short, broadly-rounded to acute snout; first dorsal-fin midpoint more posterior to pectoral-fin insertion; pelvic-fin origin closer to second dorsal fin than first dorsal fin; total vertebral counts average 99 (97–106). Molecular analysis of approximately 650 bp of the CO1 mitochondrial gene (DNA barcode region) showed separation of S. suckleyi and S. acanthias into two distinct genetic clades with 98% bootstrap support. Within species genetic diversities were 0.109±0.036% and 0.176±0.041% for S. suckleyi and S. acanthias respectively; between species diversity was 5– 6 fold greater at 0.765+0.307%. Squalus suckleyi is thus resurrected and a neotype for this endemic North Pacific Squalus species is designated.
The charismatic trumpetfishes, goatfishes, dragonets, flying gurnards, seahorses, and pipefishes encompass a recently defined yet extraordinarily diverse clade of percomorph fishes—the series Syngnatharia. This group is widely distributed in tropical and warm-temperate regions, with a great proportion of its extant diversity occurring in the Indo-Pacific. Because most syngnatharians feature long-range dispersal capabilities, tracing their biogeographic origins is challenging. Here, we applied an integrative phylogenomic approach to elucidate the evolutionary biogeography of syngnatharians. We built upon a recently published phylogenomic study that examined ultraconserved elements by adding 62 species (total 169 species) and one family (Draconettidae), to cover ca. 25% of the species diversity and all 10 families in the group. We inferred a set of time-calibrated trees and conducted ancestral range estimations. We also examined the sensitivity of these analyses to phylogenetic uncertainty (estimated from multiple genomic subsets), area delimitation, and biogeographic models that include or exclude the jump-dispersal parameter (j). Of the three factors examined, we found that the j parameter has the strongest effect in ancestral range estimates, followed by number of areas defined, and tree topology and divergence times. After accounting for these uncertainties, our results reveal that syngnatharians originated in the ancient Tethys Sea ca. 87 Ma (84–94 Ma; Late Cretaceous) and subsequently occupied the Indo-Pacific. Throughout syngnatharian history, multiple independent lineages colonized the eastern Pacific (6–8 times) and the Atlantic (6–14 times) from their center of origin, with most events taking place following an east-to-west route prior to the closure of the Tethys Seaway ca. 12–18 Ma. Ultimately, our study highlights the importance of accounting for different factors generating uncertainty in macroevolutionary and biogeographic inferences.
A new species of Mandarin dogfish, Cirrhigaleus australis n. sp., is described based on specimens from southeastern Australia. Australian populations were previously considered to be conspecific with Cirrhigaleus barbifer from the western North Pacific and Indonesia, but recent investigations revealed that the two forms differ in morphology and in the structure of the CO1 gene. Cirrhigaleus australis has a smaller eye, shorter dorsal-caudal space, and smaller pectoral fins and dorsal fins and spines. These species are clearly separable from the only other congener, C. asper, and all other members of the family Squalidae, by the possession of a greatly produced barbel on their anterior nasal flap. The new species occurs in temperate waters of eastern Australia, and possibly New Zealand.
An annotated checklist of chondrichthyan fishes (sharks, batoids, and chimaeras) occurring in Taiwanese waters is presented. The checklist is the result of a biodiversity workshop held in Mach 2012 as well as on-going systematic revisions by the authors. The chondrichthyan fauna of Taiwan is one of the richest in the world with the number of species totaling 181, comprising 52 families and 98 genera. It includes 31 families, 64 genera, and 119 species of sharks, 19 families, 31 genera, and 58 species of batoids, and 2 families, 3 genera, and 4 species of chimaeras. The most species-rich families are the Carcharhinidae with 22 species followed by the Scyliorhinidae with 17. The most species-rich batoid families are the Dasyatidae with 11 species and and the Rajidae with 10. Verified voucher material is provided for each species where available and potential taxonomic issues are high-lighted when applicable. This represents the first detailed, evidence-based checklist of chondrichthyans from Taiwanese waters in over 40 years.
The use of high-throughput sequencing technologies to produce genome-scale datasets was expected to settle some long-standing controversies across the Tree of Life, particularly in areas where short branches occur at deep timescales. Instead, these datasets have often yielded many well-supported but conflicting topologies, and highly variable gene-tree distributions. A variety of branch-support metrics beyond the nonparametric bootstrap are now available to assess how robust a phylogenetic hypothesis may be, as well as new methods to quantify gene-tree discordance. We applied multiple branch support metrics to an ancient group of marine fishes (Teleostei: Pelagiaria) whose interfamilial relationships have proven difficult to resolve due to a rapid accumulation of lineages very early in its history. We analyzed hundreds of loci including published UCE data and newly generated exonic data along with their flanking regions to represent all 16 extant families for more than 150 out of 284 valid species in the group. Branch support was lower for interfamilial relationships (except the SH-like aLRT and aBayes methods) regardless of the type of marker used. Several nodes that were highly supported with bootstrap had very low site and gene-tree concordance, revealing underlying conflict. Despite this conflict, we were able to identify four consistent interfamilial clades, each comprised of two or three families. Combining exons with their flanking regions also produced increased branch lengths in the deep branches of the pelagiarian tree. Our results demonstrate the limitations of employing current metrics of branch support and species-tree estimation when assessing the confidence of ancient evolutionary radiations and emphasize the necessity to embrace alternative measurements to explore phylogenetic uncertainty and discordance in phylogenomic datasets.
Rays are among the largest fishes and evolved from shark-like ancestors nearly 200 million years ago. They share with sharks many life history traits: all species are carnivores or scavengers; all reproduce by internal fertilisation; and all have similar morphological and anatomical characteristics, such as skeletons built of cartilage. Rays of the World is the first complete pictorial atlas of the world’s ray fauna and includes information on many species only recently discovered by scientists while undertaking research for the book. It includes all 26 families and 633 valid named species of rays, but additional undescribed species exist for many groups. Rays of the World features a unique collection of paintings of all living species by Australian natural history artist Lindsay Marshall, compiled as part of a multinational research initiative, the Chondrichthyan Tree of Life Project. Images sourced from around the planet were used by the artist to illustrate the fauna. This comprehensive overview of the world’s ray fauna summarises information such as general identifying features and distributional information about these iconic, but surprisingly poorly known, fishes. It will enable readers to gain a better understanding of the rich diversity of rays and promote wider public interest in the group. Rays of the World is an ideal reference for a wide range of readers, including conservationists, fishery managers, scientists, fishers, divers, students and book collectors.
The generic arrangement of the eagle rays (Family Myliobatidae) is revised and the genus Pteromylaeus Garman, 1913 is placed into the synonymy of Aetomylaeus Garman, 1908. Definitions are provided for the three valid genera, Aetobatus, Aetomylaeus and Myliobatis, and nomenclatural issues are discussed. Aetobatus differs from the latter two genera in having: a deeply notched nasal curtain, both jaws with a single row of chevron-shaped teeth, broadly rounded pectoral-fin free rear tips, pectoral fins separate from rostral lobe and joining head at level of eye. Aetomylaeus differs from the other two genera in having: pectoral fins separate from rostral lobe and joining head below level of eye, and stinging spine absent or present (usually not well developed when present). Myliobatis differs from the other two genera in having the pectoral fins joined to the rostral lobe by a subocular ridge. A list of valid species is provided, including a list of junior synonyms. Myliobatis australis Macleay, 1881 from southern Australia is placed into the synonymy of the previously considered endemic New Zealand species, M. tenuicaudatus Hector, 1877.
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