We have developed an automatable procedure for reconstructing the tree of life with branch lengths comparable across all three domains. The tree has its basis in a concatenation of 31 orthologs occurring in 191 species with sequenced genomes. It revealed interdomain discrepancies in taxonomic classification. Systematic detection and subsequent exclusion of products of horizontal gene transfer increased phylogenetic resolution, allowing us to confirm accepted relationships and resolve disputed and preliminary classifications. For example, we place the phylum Acidobacteria as a sister group of d-Proteobacteria, support a Gram-positive origin of Bacteria, and suggest a thermophilic last universal common ancestor.

[1] The collapse of the Maya civilization during the ninth century A.D. is a major conundrum in the history of mankind. This civilization reached a spectacular peak but then almost completely collapsed in the space of a few decades. While numerous explanations have been put forth to explain this collapse, in recent years, drought has gained favor. This is because water resources were a key for the Maya, especially to ensure their survival during the lengthy dry season that occurs where they lived. Natural drought is a known, recurring feature of this region, as evidenced by observational data, reconstructions of past times, and global climate model output. Results from simulations with a regional climate model demonstrate that deforestation by the Maya also likely induced warmer, drier, drought-like conditions. It is therefore hypothesized that the drought conditions devastating the Maya resulted from a combination of natural variability and human activities. Neither the natural drought or the human-induced effects alone were sufficient to cause the collapse, but the combination created a situation the Maya could not recover from. These results may have sobering implications for the present and future state of climate and water resources in Mesoamerica as ongoing massive deforestation is again occurring.

No abstract