The major histocompatibility complex (MHC) containing the classical human leukocyte antigen (HLA) Class I and Class II genes is among the most polymorphic and diverse regions in the human genome. Despite the clinical importance of identifying the HLA types, very few databases jointly characterize densely genotyped single nucleotide polymorphisms (SNPs) and HLA alleles in the same samples. To date, the HapMap presents the only public resource that provides a SNP reference panel for predicting HLA alleles, constructed with four collections of individuals of north-western European, northern Han Chinese, cosmopolitan Japanese and Yoruba Nigerian ancestry. Owing to complex patterns of linkage disequilibrium in this region, it is unclear whether the HapMap reference panels can be appropriately utilized for other populations. Here, we describe a public resource for the Singapore Genome Variation Project with: (i) dense genotyping across ∼ 9000 SNPs in the MHC; (ii) four-digit HLA typing for eight Class I and Class II loci, in 96 southern Han Chinese, 89 Southeast Asian Malays and 83 Tamil Indians. This resource provides population estimates of the frequencies of HLA alleles at these eight loci in the three population groups, particularly for HLA-DPA1 and HLA-DPB1 that were not assayed in HapMap. Comparing between population-specific reference panels and a cosmopolitan panel created from all four HapMap populations, we demonstrate that more accurate imputation is obtained with population-specific panels than with the cosmopolitan panel, especially for the Malays and Indians but even when imputing between northern and southern Han Chinese. As with SNP imputation, common HLA alleles were imputed with greater accuracy than low-frequency variants.
In this work, commercial IrO 2 -Ta 2 O 5 anodes with a certain composition calcined at three different temperatures were investigated. The results show that the calcination temperature has a significant influence on the electrocatalytic activity for the oxygen evolution reaction (OER). This is attributed to the influence of the calcination temperature on the surface microstructure including the crystallinity and the preferred orientation of IrO 2 crystallites of the IrO 2 -Ta 2 O 5 binary oxide formed. The surface morphology of the anodes was revealed as mud-cracks surrounded by flat areas containing several scattered IrO 2 nanocrystallites. The size of these nanocrystallites, which in turn contribute to the electrochemical active surface area, is dependent on calcination temperature. The (101)-surfaces of the IrO 2 were found to have higher catalytic activity than (110) IrO 2 with respect to the OER. The (101) IrO 2 planes were dominating at low or moderate calcination temperatures, whereas the (110) IrO 2 orientation was preferred at the highest calcination temperature. Accelerated lifetime tests of the investigated samples indicate that the (101) IrO 2 is more stable (110) IrO 2 during electrolysis. A moderate temperature is suggested as the best calcination temperature for this type of anode regarding the electrochemical active surface area, electrocatalytic activity and stability for OER in acidic aqueous electrolytes at operating conditions. © The Author Efficient electrowinning (EW) in aqueous sulfate electrolytes depends on fast reaction kinetics, low ohmic resistances and suppression of parasitic and detrimental reactions. The overall cell voltage is determined by the thermodynamic potentials for metal deposition (cathode) and oxygen evolution (anode), in addition to overpotentials and ohmic voltage drops. The sluggish reaction kinetics of the oxygen evolution reaction (OER) in low-pH sulfate electrolytes lead to rather high anode overpotential at industrial relevant current densities, thus being a significant contributor to an increased cell voltage.1 The low pH, moderate temperature and high anode potential in aqueous metal electrowinning limit the anode material selection significantly, as few materials are stable at these operating conditions. Therefore, identifying an efficient anode catalyst to facilitate the OER by lowering the overpotential has been considered an important research field over many decades also in copper EW.2,3 From an industrial perspective, stability and service lifetime of the anodes are just as important as the electrocatalytic activity. Ru oxide catalysts are known to be the most active for OER, 4 but not stable enough for long term operation in the acidic environment.5 IrO 2 is also very active toward OER and significantly more stable than RuO 2 , but also suffers from some degradation during prolonged operation. [6][7][8][9] Comninellis and Vercesi performed a comprehensive study of nine different binary catalyst coatings.10 They reported that the 70 mol% IrO 2 -30 mol% Ta...
South Asia possesses a significant amount of genetic diversity due to considerable intergroup differences in culture and language. There have been numerous reports on the genetic structure of Asian Indians, although these have mostly relied on genotyping microarrays or targeted sequencing of the mitochondria and Y chromosomes. Asian Indians in Singapore are primarily descendants of immigrants from Dravidian-language–speaking states in south India, and 38 individuals from the general population underwent deep whole-genome sequencing with a target coverage of 30X as part of the Singapore Sequencing Indian Project (SSIP). The genetic structure and diversity of these samples were compared against samples from the Singapore Sequencing Malay Project and populations in Phase 1 of the 1,000 Genomes Project (1 KGP). SSIP samples exhibited greater intra-population genetic diversity and possessed higher heterozygous-to-homozygous genotype ratio than other Asian populations. When compared against a panel of well-defined Asian Indians, the genetic makeup of the SSIP samples was closely related to South Indians. However, even though the SSIP samples clustered distinctly from the Europeans in the global population structure analysis with autosomal SNPs, eight samples were assigned to mitochondrial haplogroups that were predominantly present in Europeans and possessed higher European admixture than the remaining samples. An analysis of the relative relatedness between SSIP with two archaic hominins (Denisovan, Neanderthal) identified higher ancient admixture in East Asian populations than in SSIP. The data resource for these samples is publicly available and is expected to serve as a valuable complement to the South Asian samples in Phase 3 of 1 KGP.
The Singapore Integrative Omics Study provides valuable insights on establishing population reference measurement in 364 Chinese, Malay, and Indian individuals. These measurements include > 2.5 millions genetic variants, 21,649 transcripts expression, 282 lipid species quantification, and 284 clinical, lifestyle, and dietary variables. This concept paper introduces the depth of the data resource, and investigates the extent of ethnic variation at these omics and non-omics biomarkers. It is evident that there are specific biomarkers in each of these platforms to differentiate between the ethnicities, and intra-population analyses suggest that Chinese and Indians are the most biologically homogeneous and heterogeneous, respectively, of the three groups. Consistent patterns of correlations between lipid species also suggest the possibility of lipid tagging to simplify future lipidomics assays. The Singapore Integrative Omics Study is expected to allow the characterization of intra-omic and inter-omic correlations within and across all three ethnic groups through a systems biology approach.
The short-circuit photocurrent (ISC) that can be reversed by polarization switch enhances with temperature increasing to 130 °C in the epitaxial BiFeO3 thin film on SrTiO3 substrate. The La2/3Sr1/3MnO3/BiFeO3/indium tin oxide (In2O3:SnO2 = 9:1) junction shows the current rectifying characteristic and the photovoltaic effect at 20–130 °C. Importantly, the ISC can be reversed by the polarization switch in this temperature range. More charge carriers are activated and the density of free electrons enhances with the increase in the temperature, which results in the decrease in the depletion layer width. As a result, the open-circuit voltage decreases 50% and the ISC increases from 180 nA to 404 nA with the increase in the temperature from 20 °C to 130 °C. This suggests that the corresponding sensors and devices can be used at a relatively high temperature.
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