Aquatic origin collagen (Aqua-collagen) has been pursued as an alternative to mammalian origins. Acid-soluble collagen (ASC) and pepsin-soluble collagen (PSC) were successfully extracted from the skin of tilapia with the yield about 19-20% (basis of lyophilized dry weight), and examined for their physico-functional and structural properties. Both ASC and PSC containing α 1 , α 2 chains were characterized to be type I collagen and had lower denaturation temperature compared to mammalian origins. PSC (low telopeptides collagen) was selected for biomedical scaffolds construction due to its low immunogenicity. SEM analysis of fish collagen scaffolds showed a wide range of pore size distribution, high porosity, and high surface area-to-volume ratios. The tilapia collagen microfiber matrix scaffolds were grafted beneath the dorsal skin in 96 mice towards tissue regeneration, with bovine collagen microfiber matrix scaffolds (Avitene™ UltraFoam™ sponge) serving as control. Biocompatibility evaluation in the dorsal tissue showed that implanted scaffolds degraded completely after 20 days with no pathological inflammatory tissue responses. These findings indicated that aqua-collagens microfiber matrix scaffolds were highly biocompatible in nature, exploring its feasibility for the development of scaffolds in tissue engineering. 1. Introduction Collagen is one of non-branched chain fibrous proteins in the extracellular matrix (ECM) component, plays a pivotal role in maintaining tissue homeostasis, biological integrity and structural mechanics [1]. Collagen, up to 25% of the total proteins, being presence in skin, bone, muscle sheath, ligaments, cartilage and other connective tissues of animals [2], is contributing to unique physiological functions [3]. Generally, collagens are formed by polypeptide chains constituted by repeating triplets Gly-X-Y of Glycine and two other amino acids, where proline (Pro) and hydroxyproline (Hyp) are the most common ones among about 1000 total amino acids [4]. Currently, researchers have identified at least 27 variants of collagens on the basis of sequence homology and the molecular structure [5]. Type I was the most abundant and important collagen and was a natural macromolecular hydrocolloid with widespread use in the food, cosmetic, biomedical, and pharmaceutical industries because of its excellent biocompatibility and biodegradability, and weak antigenicity [6]. Type I collagen was most prevalent and found in connective tissues such as bone, skin, and cornea of the eyes [7], contains three α chains such as [α 1 (I)] 2 α 2 (I) and [α 1 (I)] 3. Every chain contains more than 1000 amino acids with minor difference in amino acid sequences of α chains between different vertebrates. There has a repetition of glycine in every three amino acid sequence, such sequences make the distance of α chain shortened and the space minimized, so the chains close together to form a more stable helical structure since glycine has the smallest side groups. Marine and aquaculture capture fisheries are widely dist...