Thirteen species of aquaculture food products, including fresh water and marine fish, prawns, and seaweed were collected from 37 aquaculture farms in Malaysia. Muscle and liver specimens from these species were tested for the presence of As, Cd, Cr, Cu, Hg, Pb, and Zn by using a heat vaporisation atomic absorption spectrophotometer and an inductively coupled plasma atomic emission spectrophotometer. Sea bass from each collected site were comparatively studied, where As concentrations were assumed to be caused by different culture system; and, Hg and Pb concentration were assumed to be due to anthropogenic activities in specific sites. The calculated estimated intake values

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HighlightsOf all, 4,560 viral populations were identified Many virus-encoded auxiliary metabolic genes were predicted Qinghai-Tibet plateau and bathypelagic ocean might represent a viral habitat

Alteromonas is an important symbiotic bacterium of phytoplankton, but research on its bacteriophages is still at an elementary level. Our isolation and genome characterization of a novel Alteromonas podovirus, ZP6, identified a new viral genus of podovirus and Gammaproteobacteria phages, namely, Mareflavirus .

Background Marine bacteriophages play key roles in the community structure of microorganisms, biogeochemical cycles, and the mediation of genetic diversity through horizontal gene transfer. Recently, traditional isolation methods, complemented by high-throughput sequencing metagenomics technology, have greatly increased our understanding of the diversity of bacteriophages. Oceanospirillum, within the order Oceanospirillales, are important symbiotic marine bacteria associated with hydrocarbon degradation and algal blooms, especially in polar regions. However, until now there has been no isolate of an Oceanospirillum bacteriophage, and so details of their metagenome has remained unknown. Results Here, we reported the first Oceanospirillum phage, vB_OliS_GJ44, which was assembled into a 33,786 bp linear dsDNA genome, which includes abundant tail-related and recombinant proteins. The recombinant module was highly adapted to the host, according to the tetranucleotides correlations. Genomic and morphological analyses identified vB_OliS_GJ44 as a siphovirus, however, due to the distant evolutionary relationship with any other known siphovirus, it is proposed that this virus could be classified as the type phage of a new Oceanospirivirus genus within the Siphoviridae family. vB_OliS_GJ44 showed synteny with six uncultured phages, which supports its representation in uncultured environmental viral contigs from metagenomics. Homologs of several vB_OliS_GJ44 genes have mostly been found in marine metagenomes, suggesting the prevalence of this phage genus in the oceans. Conclusions These results describe the first Oceanospirillum phage, vB_OliS_GJ44, that represents a novel viral cluster and exhibits interesting genetic features related to phage–host interactions and evolution. Thus, we propose a new viral genus Oceanospirivirus within the Siphoviridae family to reconcile this cluster, with vB_OliS_GJ44 as a representative member.

Nordic Seas are the subarctic seas connecting the Arctic Ocean and North Atlantic Ocean with complex water masses, experiencing an abrupt climate change. Though the knowledge of the marine virosphere has been expanded rapidly, the diversity of viruses and their relationships with host cells and water masses in the Nordic Seas remains to be fully revealed. Here we establish the Nordic Seas DNA viromes (NSVs) dataset of 55,315 viral contigs including 1,478 unique viral populations from seven stations influenced by both the warm Atlantic and cold Arctic water masses. Caudovirales dominated in the seven NSVs, especially in the warm Atlantic waters. The major giant nucleocytoplasmic large DNA viruses (NCLDVs) contributed a significant proportion of the classified viral contigs in the NSVs (32.2%), especially in the cold Arctic waters (44.9%). The distribution patterns of Caudovirales and NCLDVs were a reflection of the community structure of their hosts in the corresponding water masses and currents. Latitude, pH, and flow speed were found to be key factors influencing the microbial communities and co-influencing the variation of viral communities. Network analysis illustrated the tight coupling between the variation of viral communities and microbial communities in the Nordic Seas. This study suggests a probable linkage between the viromes, host cells and the surface water masses from both the cool Arctic and warm Atlantic Oceans. Importance: This is a systematic study of Nordic Seas Viromes using metagenomic analysis. The viral diversity, community structure, and their relationships with host cells and the complex water masses from both the cool Arctic and warm Atlantic Oceans were illustrated. The NCLDVs and Caudovirales are proposed as the viral characteristics of the cold Arctic and the warm Atlantic waters, respectively. This study provided an important background for the viromes in the subarctic seas connecting the Arctic Ocean and North Atlantic Ocean, and will shed a light on their responses to the abrupt climate change in the future.

Vibriophage vB_VpaM_PG19 was distant from other isolated microviruses in the phylogenetic tree and network analysis and represents a novel microviral genus, named Vimicrovirus . Our report describes the genomic and phylogenetic features of vB_VpaM_PG19 and provides a potential antimicrobial candidate for pathogenic V. parahaemolyticus .

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