It is essential for cells to control which genes are transcribed into RNA. In eukaryotes, two major control points are recruitment of RNA polymerase II (Pol II) into a paused state, and subsequent pause release toward transcription. Pol II recruitment and pause release occur in association with macromolecular clusters, which were proposed to be formed by a liquid–liquid phase separation mechanism. How such a phase separation mechanism relates to the interaction of Pol II with DNA during recruitment and transcription, however, remains poorly understood. Here, we use live and super‐resolution microscopy in zebrafish embryos to reveal Pol II clusters with a large variety of shapes, which can be explained by a theoretical model in which regulatory chromatin regions provide surfaces for liquid‐phase condensation at concentrations that are too low for canonical liquid–liquid phase separation. Model simulations and chemical perturbation experiments indicate that recruited Pol II contributes to the formation of these surface‐associated condensates, whereas elongating Pol II is excluded from these condensates and thereby drives their unfolding.
The determination of nanoscale distances or distance changes necessitates a nanoscale ruler. In the present paper, distance dependence of particle temperature in an optically heated gold nanoparticle pair is quantitatively investigated to explore the possibility of creating a plasmon ruler based on this effect. The two origins of the distance-dependence, i.e., electromagnetic coupling and thermal accumulative effect, are studied. For the particle temperature, a scaling behavior is found, and it suggests that the decay of particle temperature with the interparticle gap for different particle sizes follows a common exponential decay equation. This scaling behavior is qualitatively explained with a simple dipolar-coupling model combined with a point heat source interaction model. On the basis of this scaling behavior of absorption power, we further establish a plasmon ruler equation relating the particle temperature and the interparticle distance. Our findings can serve as an excellent guideline for designing and optimizing temperature-based plasmon rulers.
Plasmonic enhancement of two-photon-excited fluorescence is not only of fundamental interest but also appealing for many bioimaging and photonic applications. The high peak intensity required for two-photon excitation may cause shape changes in plasmonic nanostructures, as well as transient plasmon broadening. Yet, in this work, we report on strong enhancement of the two-photon-excited photoluminescence of single colloidal quantum dots close to isolated chemically synthesized gold nanorods. Upon resonant excitation of the localized surface plasmon resonance, a gold nanorod can enhance the photoluminescence of a single quantum dot more than 10 000-fold. This strong enhancement arises from the combined effect of local field amplification and the competition between radiative and nonradiative decay rate enhancements, as is confirmed by time-resolved fluorescence measurements and numerical simulations.
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