Molecular communication (MC) is a new communication engineering paradigm where molecules are employed as information carriers. MC systems are expected to enable new revolutionary applications such as sensing of target substances in biotechnology, smart drug delivery in medicine, and monitoring of oil pipelines or chemical reactors in industrial settings. As for any other kind of communication, simple yet sufficiently accurate channel models are needed for the design, analysis, and efficient operation of MC systems. In this paper, we provide a tutorial review on mathematical channel modeling for diffusive MC systems. The considered end-to-end MC channel models incorporate the effects of the release mechanism, the MC environment, and the reception mechanism on the observed information molecules. Thereby, the various existing models for the different components of an MC system are presented under a common framework and the underlying biological, chemical, and physical phenomena are discussed. Deterministic models characterizing the expected number of molecules observed at the receiver and statistical models characterizing the actual number of observed molecules are developed. In addition, we provide channel models for timevarying MC systems with moving transmitters and receivers, which are relevant for advanced applications such as smart drug delivery with mobile nanomachines. For complex scenarios, where simple MC channel models cannot be obtained from first principles, we investigate simulation-driven and experimentallydriven channel models. Finally, we provide a detailed discussion of potential challenges, open research problems, and future directions in channel modeling for diffusive MC systems.
Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the MC testbeds reported in the literature so far are mostly at macroscale. This may partially be due to the fact that controlling an MC system at microscale is challenging. To link the macroworld to the microworld, we propose and demonstrate a biological signal conversion interface that can also be seen as a microscale modulator. In particular, the proposed interface transduces an optical signal, which is controlled using a lightemitting diode (LED), into a chemical signal by changing the pH of the environment. The modulator is realized using Escherichia coli bacteria as microscale entity expressing the light-driven proton pump gloeorhodopsin from Gloeobacter violaceus. Upon inducing external light stimuli, these bacteria locally change their surrounding pH level by exporting protons into the environment. To verify the effectiveness of the proposed optical-to-chemical signal converter, we analyze the pH signal measured by a pH sensor, which serves as receiver. We develop an analytical parametric model for the induced chemical signal as a function of the applied optical signal. Using this model, we derive a trainingbased channel estimator which estimates the parameters of the proposed model to fit the measurement data based on a least square error approach. We further derive the optimal maximum likelihood detector and a suboptimal low-complexity detector to recover the transmitted data from the measured received signal. It is shown that the proposed parametric model is in good agreement with the measurement data. Moreover, for an example scenario, we show that the proposed setup is able to successfully convert an optical signal representing a sequence of binary symbols into a chemical signal with a bit rate of 1 bit/min and recover the transmitted data from the chemical signal using the proposed estimation and detection schemes. The proposed modulator may form the basis for future MC testbeds and applications at microscale.
Active transport such as fluid flow is sought in molecular communication to extend coverage, improve reliability, and mitigate interference. Flow models are often over-simplified, assuming one-dimensional diffusion with constant drift. However, diffusion and flow are usually encountered in three-dimensional bounded environments where the flow is highly non-uniform such as in blood vessels or microfluidic channels. For a qualitative understanding of the relevant physical effects inherent to these channels, based on the Péclet number and the transmitterreceiver distance, we study when simplified models of uniform flow and advection-only transport are applicable. For these two regimes, analytical expressions for the channel impulse response are derived and validated by particle-based simulation. Furthermore, as advection-only transport is typically overlooked and hence not analyzed in the molecular communication literature, we evaluate the symbol error rate for exemplary on-off keying as performance metric.
In this paper, we propose using mobile nanosensors (MNSs) for early stage anomaly detection. For concreteness, we focus on the detection of cancer cells located in a particular region of a blood vessel.These cancer cells produce and emit special molecules, so-called biomarkers, which are symptomatic for the presence of anomaly, into the cardiovascular system. Detection of cancer biomarkers with conventional blood tests is difficult in the early stages of a cancer due to the very low concentration of the biomarkers in the samples taken. However, close to the cancer cells, the concentration of the cancer biomarkers is high. Hence, detection is possible if a sensor with the ability to detect these biomarkers is placed in the vicinity of the cancer cells. Therefore, in this paper, we study the use of MNSs that are injected at a suitable injection site and can move through the blood vessels of the cardiovascular system, which potentially contain cancer cells. These MNSs can be activated by the biomarkers close to the cancer cells, where the biomarker concentration is sufficiently high. Eventually, the MNSs are collected by a fusion center (FC) where their activation levels are read and exploited to declare the presence of anomaly. We analytically derive the biomarker concentration in cancerous blood vessels as well as the probability mass function of the MNSs' activation levels and validate the obtained results via particle-based simulations. Then, we derive the optimal decision rule for the FC regarding the presence of anomaly assuming that the entire network is known at the FC. Finally, for the FC, we propose a simple sum detector that does not require knowledge of the network topology. Our simulations reveal that while the LRT detector achieves a higher performance than the sum detector, both proposed detectors significantly outperform a benchmark scheme that uses fixed nanosensors at the FC.
Superparamagnetic iron oxide nanoparticles (SPIONs) have recently been introduced as information carriers in a testbed for molecular communication (MC) in duct flow. Here, a new receiver for this testbed is presented, based on the concept of a bridge circuit. The capability for a reliable transmission using the testbed and detection of the proposed receiver was evaluated by sending a text message and a 80 bit random sequence at a bit rate of 1/s, which resulted in a bit error rate of 0 %. Furthermore, the sensitivity of the device was assessed by a dilution series, which gave a limit for the detectability of peaks between 0.1 to 0.5 mg/mL. Compared to the commercial susceptometer that was previously used as receiver, the new detector provides an increased sampling rate of 100 samples/s and flexibility in the dimensions of the propagation channel. Furthermore, it allows to implement both single-ended and differential signaling in SPION-bases MC testbeds.
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