Increased nutrient loading associated with rapid population growth is the leading cause of deteriorating water quality in urbanized estuaries globally. Small estuaries are particularly sensitive to changes when connection with the marine environment is restricted, or lost, because of high water retention. The temporarily closed Hartenbos Estuary (South Africa) is an example of how such pressures can culminate in a severely degraded ecosystem. Wastewater treatment work (WWTW) discharges introduce substantial volumes of freshwater (8,000 m3 d–1) and nutrient loads (38 kg DIN d–1 and 22 kg DIP d–1) into this estuary. This constant inflow has necessitated frequent artificial breaching (inducing alternating states) of the estuary mouth to prevent flooding of low-lying developments and, occasionally, to mitigate against extreme events such as fish kills and sewage spills. This study investigated the efficacy of artificial mouth breaching practices in eliciting responses in selected abiotic and biotic parameters. Microalgal (phytoplankton and benthic diatoms), benthic macrofauna and fish community dynamics were assessed in response to mouth state and water quality conditions using a seasonal monitoring programme. The hypereutrophic nature of the Hartenbos Estuary was highlighted by persistent high-biomass phytoplankton accumulations (>100 μg Chl-a l–1), extreme dissolved oxygen conditions (0.4–20.5 mg O2 l–1) and the predominance of harmful algal bloom (HAB) events comprising Nannochloropsis sp. and Heterosigma akashiwo. Artificial breaching of the mouth facilitated limited tidal exchange and occurred approximately bimonthly once water levels exceeded 1.9 m above mean sea level (MSL). Current pressures and management interventions have culminated in an ecosystem void of natural fluctuations and instead characterised by low diversity and shifts between undesirable states. This is highlighted by the near year-round dominance of only a few opportunistic species/groups tolerant of adverse conditions (e.g., Nannochloropsis sp., Halamphora coffeiformis, oligochaetes, estuarine round herring Gilchristella aestuaria, and southern mullet Chelon richardsonii). Therefore, catchment-scale interventions such as the diversion of WWTW discharges and restoration of hydrodynamic variability are management priorities for improving the health and biodiversity of small, closed microtidal systems such as the Hartenbos Estuary.
Background The Vaccine Ontology (VO) is a biomedical ontology that standardizes vaccine annotation. Errors in VO will affect a multitude of applications that it is being used in. Quality assurance of VO is imperative to ensure that it provides accurate domain knowledge to these downstream tasks. Manual review to identify and fix quality issues (such as missing hierarchical is-a relations) is challenging given the complexity of the ontology. Automated approaches are highly desirable to facilitate the quality assurance of VO. Methods We developed an automated lexical approach that identifies potentially missing is-a relations in VO. First, we construct two types of VO concept-pairs: (1) linked; and (2) unlinked. Each concept-pair further derives an Acquired Term Pair (ATP) based on their lexical features. If the same ATP is obtained by a linked concept-pair and an unlinked concept-pair, this is considered to indicate a potentially missing is-a relation between the unlinked pair of concepts. Results Applying this approach on the 1.1.192 version of VO, we were able to identify 232 potentially missing is-a relations. A manual review by a VO domain expert on a random sample of 70 potentially missing is-a relations revealed that 65 of the cases were valid missing is-a relations in VO (a precision of 92.86%). Conclusions The results indicate that our approach is highly effective in identifying missing is-a relation in VO.
In recent years much has been written and spoken concerning the training which the college and university should give to the student who expects to enter the field of chemistry. Too little attention, however, has been given to the order of the program. Following the example set by the technical schools, the departments of chemistry in our colleges and graduate schools should give more adequate and detailed guidance to the student in the selection and the sequence of those supporting courses which he should take outside his own major field.
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