Cloud cover increases the proportion of diffuse radiation reaching the Earth's surface and affects many microclimatic factors such as temperature, vapour pressure deficit and precipitation. We compared the relative efficiencies of canopy photosynthesis to diffuse and direct photosynthetic photon flux density (PPFD) for a Norway spruce forest (25-year-old, leaf area index 11 m 2 m À2 ) during two successive 7-day periods in August. The comparison was based on the response of net ecosystem exchange (NEE) of CO 2 to PPFD. NEE and stomatal conductance at the canopy level (G canopy ) was estimated from halfhourly eddy-covariance measurements of CO 2 and H 2 O fluxes. In addition, daily courses of CO 2 assimilation rate (A N ) and stomatal conductance (G s ) at shoot level were measured using a gas-exchange technique applied to branches of trees. The extent of spectral changes in incident solar radiation was assessed using a spectroradiometer.We found significantly higher NEE (up to 150%) during the cloudy periods compared with the sunny periods at corresponding PPFDs. Prevailing diffuse radiation under the cloudy days resulted in a significantly lower compensation irradiance (by ca. 50% and 70%), while apparent quantum yield was slightly higher (by ca. 7%) at canopy level and significantly higher (by ca. 530%) in sun-acclimated shoots. The main reasons for these differences appear to be (1) more favourable microclimatic conditions during cloudy periods, (2) stimulation of photochemical reactions and stomatal opening via an increase of blue/red light ratio, and (3) increased penetration of light into the canopy and thus a more equitable distribution of light between leaves.Our analyses identified the most important reason of enhanced NEE under cloudy sky conditions to be the effective penetration of diffuse radiation to lower depths of the canopy. This subsequently led to the significantly higher solar equivalent leaf area compared with the direct radiation. Most of the leaves in such dense canopy are in deep shade, with marginal or negative carbon balances during sunny days. These findings show that the energy of diffuse, compared with direct, solar radiation is used more efficiently in assimilation processes at both leaf and canopy levels.

Summary1. Cloud cover affects carbon exchange between biota and the atmosphere. Recent studies have demonstrated that an increase in the diffuse radiation fraction enhances the photosynthetic efficiency of canopies. Although the exact mechanism behind this effect is not clear, a more even distribution of light among leaves across the vertical profile of the canopy is considered to be the most important cause of this difference. 2. To test this hypothesis, the net ecosystem production (NEP) of a Norway spruce forest (30-year-old) was measured under cloudy and sunny skies by the eddy covariance method. In parallel, measurements of the diurnal courses of gas exchange and chlorophyll fluorescence parameters were made in the upper sun (5th whorl; 1-year-old needles), middle (8th and 10th whorl; 1-and 2-year-old needles) and lower shade (15th whorl; >2-year-old needles) shoots. 3. The higher diffuse radiation fraction during cloudy days resulted in significantly higher ecosystem carbon uptake than at corresponding incident photosynthetic photon flux density on sunny days. Our shoot-level data show that shoots from deep within the canopy contribute substantially to the overall carbon balance during cloudy days. But, although shade-adapted shoots had a markedly positive carbon balance over a 24-h period on cloudy days, their performance was impaired on sunny days contributing only a marginal or even negative carbon balance from the middle and shaded parts of the canopy. The uppermost sun shoots contributed 78% of the total carbon assimilated during a sunny day, but only 43% during a cloudy day. 4. In addition, afternoon depression of canopy NEP and CO 2 assimilation rates of the uppermost shoots (5th and 8th whorl) occurred in response to irradiance on sunny days, characterized by significant decreases in CO 2 uptake and apparent quantum yield; however, this depression did not occur under cloudy conditions. Stomatal and non-stomatal regulations of carbon assimilation in the afternoon are discussed.

Chloroplast thylakoid membranes contain virtually all components of the energy-converting photosynthetic machinery. Their energized state, driving ATP synthesis, is enabled by the bilayer organization of the membrane. However, their most abundant lipid species is a non-bilayer-forming lipid, monogalactosyl-diacylglycerol; the role of lipid polymorphism in these membranes is poorly understood. Earlier 31P-NMR experiments revealed the coexistence of a bilayer and a non-bilayer, isotropic lipid phase in spinach thylakoids. Packing of lipid molecules, tested by fluorescence spectroscopy of the lipophilic dye, merocyanine-540 (MC540), also displayed heterogeneity. Now, our 31P-NMR experiments on spinach thylakoids uncover the presence of a bilayer and three non-bilayer lipid phases; time-resolved fluorescence spectroscopy of MC540 also reveals the presence of multiple lipidic environments. It is also shown by 31P-NMR that: (i) some lipid phases are sensitive to the osmolarity and ionic strength of the medium, (ii) a lipid phase can be modulated by catalytic hydrogenation of fatty acids and (iii) a marked increase of one of the non-bilayer phases upon lowering the pH of the medium is observed. These data provide additional experimental evidence for the polymorphism of lipid phases in thylakoids and suggest that non-bilayer phases play an active role in the structural dynamics of thylakoid membranes.

Photosystem II (PSII) catalyses the photoinduced oxygen evolution and, by producing reducing equivalents drives, in concert with PSI, the conversion of carbon dioxide to sugars. Our knowledge about the architecture of the reaction centre (RC) complex and the mechanisms of charge separation and stabilisation is well advanced. However, our understanding of the processes associated with the functioning of RC is incomplete: the photochemical activity of PSII is routinely monitored by chlorophyll-a fluorescence induction but the presently available data are not free of controversy. In this work, we examined the nature of gradual fluorescence rise of PSII elicited by trains of single-turnover saturating flashes (STSFs) in the presence of a PSII inhibitor, permitting only one stable charge separation. We show that a substantial part of the fluorescence rise originates from light-induced processes that occur after the stabilisation of charge separation, induced by the first STSF; the temperature-dependent relaxation characteristics suggest the involvement of conformational changes in the additional rise. In experiments using double flashes with variable waiting times (∆τ) between them, we found that no rise could be induced with zero or short ∆τ, the value of which depended on the temperature - revealing a previously unknown rate-limiting step in PSII.