The Altai region of Siberia was inhabited for parts of the Pleistocene by at least two archaic hominin groups-Denisovans and Neanderthals. Denisova Cave uniquely contains stratified deposits with the skeletal and genetic remains of both hominins, artefacts made from stone and other materials, and a range of animal and plant remains. The previous site chronology is based largely on radiocarbon ages for fragments of bone and charcoal up to 50,000 years old, with older ages of equivocal reliability estimated from thermoluminescence and palaeomagnetic analyses of sediments and genetic analyses of hominin DNA. Here we describe the stratigraphic sequences in Denisova Cave, establish a chronology for the Pleistocene deposits and associated remains from optical dating of the cave sediments, and reconstruct the environmental context to hominin occupation from around 300,000 to 20,000 years ago. The period of existence and geographical distribution of Neanderthals and their sister group, dubbed the Denisovans 1,2 , are key unresolved issues in the study of human evolution and dispersal. Denisovan remains are known only from the type locality of Denisova Cave, which is located in the foothills of the Altai Mountains in southern Siberia (51°23′51.3′′N, 84°40′34.3′′E; Fig. 1a). Neanderthal remains have also been recovered from the cave deposits.

Denisova Cave in southern Siberia uniquely contains evidence of occupation by a recently discovered group of archaic hominins, the Denisovans, starting from the middle of the Middle Pleistocene. Artefacts, ancient DNA and a range of animal and plant remains have been recovered from the sedimentary deposits, along with a few fragmentary fossils of Denisovans, Neanderthals and a first-generation Neanderthal–Denisovan offspring. The deposits also contain microscopic traces of hominin and animal activities that can provide insights into the use of the cave over the last 300,000 years. Here we report the results of a micromorphological study of intact sediment blocks collected from the Pleistocene deposits in the Main and East Chambers of Denisova Cave. The presence of charcoal attests to the use of fire by hominins, but other evidence of their activities preserved in the microstratigraphic record are few. The ubiquitous occurrence of coprolites, which we attribute primarily to hyenas, indicates that the site was visited for much of its depositional history by cave-dwelling carnivores. Microscopic traces of post-depositional diagenesis, bioturbation and incipient cryoturbation are observed in only a few regions of the deposit examined here. Micromorphology can help identify areas of sedimentary deposit that are most conducive to ancient DNA preservation and could be usefully integrated with DNA analyses of sediments at archaeological sites to illuminate features of their human and environmental history that are invisible to the naked eye.

The original version of this Article contained errors in Figure 3, in panels (a) and (b), where the 'Initial Upper Palaeolithic' was incorrectly given as 'Initial Middle Palaeolithic' .In addition, in panel (a), the break of the middle MP and the IUP between layers 12.1 and 11.4 was incorrectly placed between layers 14 and 12.3.The original Figure 3 and accompanying legend appear below.The original Article has been corrected.