Single molecules that act as light-energy transducers (e.g., converting the energy of a photon into atomic-level mechanical motion) are examples of minimal molecular devices. Here, we focus on a molecular switch designed by merging a conformationally locked diarylidene skeleton with a retinal-like Schiff base and capable of mimicking, in solution, different aspects of the transduction of the visual pigment Rhodopsin. Complementary ab initio multiconfigurational quantum chemistry-based computations and time-resolved spectroscopy are used to follow the light-induced isomerization of the switch in methanol. The results show that, similar to rhodopsin, the isomerization occurs on a 0.3-ps time scale and is followed by <10-ps cooling and solvation. The entire (2-photon-powered) switch cycle was traced by following the evolution of its infrared spectrum. These measurements indicate that a full cycle can be completed within 20 ps.CASPT2//CASSCF ͉ mid-IR ͉ photochemical switch ͉ time resolved spectroscopy ͉ UV-vis M olecular switches based on photochemical E/Z isomerizations have been used in different contexts to convert light energy into ''mechanical'' motion at the molecular level (1-3). For instance, switches based on azobenzene have been used to control ion complexation (4, 5), electronic properties (6), catalysis (7), and the folding of peptides (8-13) whereas diarylidenes have provided the framework for the construction of rotary motors and transmissions (14). The computer modeling of switches that differ in size, polarity, and isomerization mechanism represents an attractive research target (15) yielding building blocks to be used in diverse molecular environments. However, this cannot be limited to the computation of equilibrium properties but requires the description of the entire photocycle. In other words, one needs to compute the potential energy surfaces controlling the switch E 3 Z and Z 3 E excited-state evolution, its decay and ground state relaxation, and the competing thermal E/Z isomerization in the proper environment (e.g., in solution or in a biomolecule backbone). The complexity of these calculations impedes the study of candidates that are intractable with accurate quantum chemical methods (allowing comparison with spectroscopic data) or that feature, as for azobenzene and diarylidenes (16), more than 1 low-lying excited state, leading to a plethora of reaction paths to be computed.The retinal protonated Schiff-base chromophore of rhodopsins (17-19) constitutes an example of an E/Z switch shaped by biological evolution that can be modeled with quantitative computations (20). In bovine rhodopsin (Rh), a selective photoisomerization of the 11-cis chromophore (PSB11) occurs via evolution of a single 3 * excited state (S 1 ) that survives for only 150 fs and yields, upon decay, the all-trans ground state (S 0 ) product with a 67% quantum yield (16,20). Although these properties make Rh an excellent reference for the design of E/Z switches, irradiation of PSB11 in solution (26, 27) features an unselec...
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The α-ketoamide motif is widely found in many natural products and drug candidates with relevant biological activities. Furthermore, α-ketoamides are attractive candidates to synthetic chemists due to the ability of the motif to access a wide range of functional group transformations, including multiple bond-forming processes. For these reasons, a vast array of synthetic procedures for the preparation of α-ketoamides have been developed over the past decades, and the search for expeditious and efficient protocols continues unabated. The aim of this review is to give an overview of the diverse methodologies that have emerged since the 1990s up to the present. The different synthetic routes have been grouped according to the way the α-ketoamide moiety has been created. Thus, syntheses of α-ketoamides proceeding via C(2)-oxidation of amide starting compounds are detailed, as are amidation approaches installing the α-ketoamide residue through C(1)-N bond formation. Also discussed are the methodologies centered on C(1)-C(2) σ-bond construction and C(2)-R/Ar bond-forming processes. Finally, the literature regarding the synthesis of α-ketoamide compounds by palladium-catalyzed double-carbonylative amination reactions is discussed.
Designing and testing biomimetic switches: Multireference perturbation theory is used to model a light-driven molecular switch featuring the same photoisomerization mechanism as the chromophore of the visual pigment rhodopsin (see picture; QM/MM: quantum mechanics/molecular mechanics). By exploiting a synthetic route based on nitrilium-cation cyclization, it was shown that the designed system can indeed be prepared and characterized
We report the results of a multidisciplinary research effort where the methods of computational photochemistry and retrosynthetic analysis/synthesis have contributed to the preparation of a novel N-alkylated indanylidene-pyrroline Schiff base featuring an exocyclic double bond and a permanent zwitterionic head. We show that, due to its large dipole moment and efficient photoisomerization, such a system may constitute the prototype of a novel generation of electrostatic switches achieving a reversible light-induced dipole moment change on the order of 30 D. The modeling of a peptide fragment incorporating the zwitterionic head into a conformationally rigid side chain shows that the switch can effectively modulate the fluorescence of a tryptophan probe.
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