Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissions of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazon tree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.

Summary Reducing uncertainties in the response of tropical forests to global change requires understanding how intra‐ and interannual climatic variability selects for different species, community functional composition and ecosystem functioning, so that the response to climatic events of differing frequency and severity can be predicted. Here we present an extensive dataset of hydraulic traits of dominant species in two tropical Amazon forests with contrasting precipitation regimes – low seasonality forest (LSF) and high seasonality forest (HSF) – and relate them to community and ecosystem response to the El Niño–Southern Oscillation (ENSO) of 2015. Hydraulic traits indicated higher drought tolerance in the HSF than in the LSF. Despite more intense drought and lower plant water potentials in HSF during the 2015‐ENSO, greater xylem embolism resistance maintained similar hydraulic safety margin as in LSF. This likely explains how ecosystem‐scale whole‐forest canopy conductance at HSF maintained a similar response to atmospheric drought as at LSF, despite their water transport systems operating at different water potentials. Our results indicate that contrasting precipitation regimes (at seasonal and interannual time scales) select for assemblies of hydraulic traits and taxa at the community level, which may have a significant role in modulating forest drought response at ecosystem scales.

Advanced recruitment and neutral processes play important roles in determining tree species composition in tropical forest canopy gaps, with few gaps experiencing clear secondary successional processes. However, most studies are limited to the relatively limited spatial scales provided by forest inventory plots, and investigations over the entire range of gap size are needed to better understand how ecological processes vary with tree mortality events. This study employed a landscape approach to test the hypothesis that tree species composition and forest structural attributes differ between large blowdown gaps and relatively undisturbed primary forest. Spectral mixture analysis on hyperspectral satellite imagery was employed to direct field sampling to widely distributed sites, and blowdown plots were compared with undisturbed primary forest plots. Tree species composition and forest structural attributes differed markedly between gap and non-gap sites, providing evidence of niche partitioning in response to disturbance across the region. Large gaps were dominated by classic Neotropical pioneer genera such as Cecropia and Vismia, and average tree size was significantly smaller. Mean wood density of trees recovering in large gaps (0.55 g cm(-3)) was significantly lower than in primary forest plots (0.71 g cm(-3)), a difference similar to that found when comparing less dynamic (i.e., tree recruitment, growth, and mortality) Central Amazon forests with more dynamic Western Amazon forests. Based on results, we hypothesize that the importance of neutral processes weaken, and niche processes strengthen, in determining community assembly along a gradient in gap size and tree mortality intensity. Over evolutionary time scales, pervasive dispersal among colonizers could result in the loss of tree diversity in the pioneer guild through competitive exclusion. Results also underscore the importance of considering disturbance processes across the landscape when addressing forest carbon balance.

RESUMOOs fatores que envolvem os processos da dinâmica da floresta influenciam a sua biodiversidade e, portanto, a qualidade da floresta. A definição de estratégias que envolve a proteção e o uso adequado da floresta manejada e a recuperação de áreas já degradadas tornam-se possível com o estudo da estrutura e dinâmica da floresta primária por meio de informações como a mortalidade, o recrutamento e a permanência das árvores no sistema florestal. Este trabalho teve como objetivo avaliar a dinâmica de uma floresta não perturbada e fazer projeções da dinâmica florestal usando a matriz de transição probabilística (Cadeia de Markov). (2008)). O teste Qui-quadrado mostrou que não há diferença significativa (1% de probabilidade) entre as informações coletadas e projetadas. Esses resultados permitem concluir que a Cadeia de Markov é um eficiente instrumento para projetar a dinâmica da floresta natural, contribuindo para o planejamento em curto prazo das atividades que utilizam os recursos florestais. PALAVRAS-CHAVEbiomassa, Recrutamento, Mortalidade, Incremento. Dynamics of the Terra-firme primary forest in Manaus-AM region using the Markov probabilistic transition matrix ABSTRACTTo combine protection and utilization of forest resources in the tropics, the understanding of forest dynamics is essential. It is also important in the definition of strategies for rehabilitation of degraded areas. In Forestry, forest dynamics could be translated as the understanding of recruitment, mortality and biomass increment rates over time. For this study, these rates were estimated based on measurements carried out in 2000 and 2004 over two transects measuring 20 by 2500 m (5 hectares) each, in Manaus region. This paper deals with forest dynamics of a pristine forest based on the probabilistic transition matrix (the first-order Markov Chain) approach. The main objective is to report 4-year (2000 to 2004) changes in the forest structure. Diameter distribution and tree mortality will be projected ahead to 2008 (t+2), based upon a 4-year period of observations completed in 2004 (t+1) and its immediate past in 2000 (t). In terms of fresh aboveground biomass, this site accumulated 8.34 t.ha -1 .ano -1 . The χ 2 test has shown no statistical difference (p = 0.01) between observed diameter frequency and the expected projected by Markov Chain. This result indicates that the Markov Chain approach is a reliable tool to project the forest dynamics on a short-term basis. In 2008, the total number of individuals will have a decrease of 2.7%, and the mortality rate will 15% higher than in 2004.

Abstract. Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90 % of the total aboveground biomass (AGB) in tropical forests and precise tree biomass estimation models are crucial for management and conservation. In the central Amazon, predicting AGB at large spatial scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in tree allometry and architecture. We parameterized generic AGB estimation models applicable across species and a wide range of structural and compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees (diameter at breast height  ≥  5 cm) from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this data set we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape level across successional gradients. We found that good individual tree model fits do not necessarily translate into reliable predictions of AGB at the landscape level. When predicting AGB (dry mass) over scenarios using our different models and an available pantropical model, we observed systematic biases ranging from −31 % (pantropical) to +39 %, with root-mean-square error (RMSE) values of up to 130 Mg ha−1 (pantropical). Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha−1) when applied over scenarios. Predicting biomass correctly at the landscape level in hyperdiverse and structurally complex tropical forests, especially allowing good performance at the margins of data availability for model construction/calibration, requires the inclusion of predictors that express inherent variations in species architecture. The model of interest should comprise the floristic composition and size-distribution variability of the target forest, implying that even generic global or pantropical biomass estimation models can lead to strong biases. Reliable biomass assessments for the Amazon basin (i.e., secondary forests) still depend on the collection of allometric data at the local/regional scale and forest inventories including species-specific attributes, which are often unavailable or estimated imprecisely in most regions.

<p><strong>Abstract.</strong> Isoprene (Is) emissions by plants represent a loss of carbon and energy resources leading to the initial hypothesis that fast growing pioneer species in secondary tropical forests allocate carbon primarily to growth at the expense of isoprenoid defenses. In this study, we quantified leaf isoprene and methanol emissions from the abundant pantropical pioneer tree species Vismia guianensis and ambient isoprene concentrations above a diverse secondary forest in the central Amazon. As photosynthetically active radiation (PAR) was varied (0 to 3,000 µmol m<sup>−2</sup> s<sup>−1</sup>) under standard leaf temperature (30 °C), isoprene emissions from V. guianensis increased without saturation up to 80 nmol m<sup>−2</sup> s<sup>−1</sup>. A non-linear increase in isoprene emissions with respect to net photosynthesis (Pn) resulted with the fraction of Pn dedicated to isoprene emissions increasing with light intensity (up to 2 % of Pn). Emission responses to temperature under standard light conditions (PAR of 1,000 µmol m<sup>−2</sup> s<sup>−1</sup>) resulted in the classic uncoupling of isoprene emissions (T<sub>opt,iso</sub> > 40 ºC) from net photosynthesis (T<sub>opt, Pn</sub> = 30.0–32.5 °C) with up to 7 % of Pn emitted as isoprene at 40 °C. Under standard environmental conditions of PAR and leaf temperature, young <i>V. guianensis</i> leaves showed high methanol emissions, low Pn, and low isoprene emissions. In contrast, mature leaves showed high Pn, high isoprene emissions, and low methanol emissions, highlighting the differential control of leaf phenology over methanol and isoprene emissions. High daytime ambient isoprene concentrations (11 ppbv) were observed above a secondary Amazon rainforest suggesting that isoprene emissions are common among neotropical pioneer species. The results are not consistent with the initial hypothesis and support a functional role of methanol during leaf expansion and the establishment of photosynthetic machinery, and a protective role of isoprene for photosynthesis during high temperature extremes regularly experienced in secondary rainforest ecosystems.</p>

Abstract. Isoprene (Is) emissions by plants represent a loss of carbon and energy resources leading to the initial hypothesis that fast growing pioneer species in secondary tropical forests allocate carbon primarily to growth at the expense of isoprenoid defenses. In this study, we quantified leaf isoprene and methanol emissions from the abundant pantropical pioneer tree species Vismia guianensis and ambient isoprene concentrations above a diverse secondary forest in the central Amazon. As photosynthetically active radiation (PAR) was varied (0 to 3000 µmol m −2 s −1 ) under standard leaf temperature (30 • C), isoprene emissions from V. guianensis increased without saturation up to 80 nmol m −2 s −1 . A nonlinear increase in isoprene emissions with respect to net photosynthesis (Pn) resulted in the fraction of Pn dedicated to isoprene emissions increasing with light intensity (up to 2 % of Pn). Emission responses to temperature under standard light conditions (PAR of 1000 µmol m −2 s −1 ) resulted in the classic uncoupling of isoprene emissions (T opt,iso > 40 • C) from net photosynthesis (T opt,Pn = 30.0-32.5 • C) with up to 7 % of Pn emitted as isoprene at 40 • C. Under standard environmental conditions of PAR and leaf temperature, young V. guianensis leaves showed high methanol emissions, low Pn, and low isoprene emissions. In contrast, mature leaves showed high Pn, high isoprene emissions, and low methanol emissions, highlighting the differential control of leaf phenology over methanol and isoprene emissions. High daytime ambient isoprene concentrations (11 ppbv) were observed above a secondary Amazon rainforest, suggesting that isoprene emissions are common among neotropical pioneer species. The results are not consistent with the initial hypothesis and support a functional role of methanol during leaf expansion and the establishment of photosynthetic machinery and a protective role of isoprene for photosynthesis during high temperature extremes regularly experienced in secondary rainforest ecosystems.

RESUMONa Amazônia, o fogo é ainda o principal trato cultural utilizado no preparo de solo para agricultura e pecuária, tanto pelos pequenos como pelos grandes fazendeiros. Combinando à baixa fertilidade do solo e ao baixo preço da terra, assim que as fontes naturais de nutrientes são exauridas, as áreas são abandonadas e novas florestas primárias são derrubadas e queimadas. Por conta disso, grandes extensões de área da Amazônia são cobertas por florestas secundárias originadas de áreas abandonadas pela agricultura ou pastagem. Este estudo foi conduzido em uma área experimental usada em uma pesquisa sobre eficiência de combustão e emissão de gás carbônico da floresta amazônica, localizada aproximadamente 50 km ao norte de Manaus. A vegetação da área experimental foi derrubada e queimada em 1991, simulando as condições em que o pequeno agricultor prepara o solo para plantios de subsistência. Dez anos após a queimada, a floresta secundária ainda é bastante diferente da floresta original. As espécies vegetais dominantes são, principalmente, das famílias botânicas Annonaceae, Arecaceae, Burseraceae, Cecropiaceae, Euphorbiaceae, Fabaceae, Lecythidaceae, Melastomataceae, Mimosaceae, Sapindaceae e Sterculiaceae. O estoque de biomassa recuperado, dez anos após a formação da capoeira estudada, é de aproximadamente 16%, ou seja, a capoeira apresenta um estoque médio de 56,2 t.ha -1 ± 12 (IC 95%), enquanto que o estoque da floresta primária é de 339,7 t.ha -1 ± 66,7 (IC 95 %). PALAVRAS-CHAVE