The promoter homology-dependent inactivation of a 35Spro-hygromycin phosphotransferase (hpt) gene, which is present at the H2 locus, by the multipurpose 271 silencing locus has been studied. The 271 locus can silence any gene under the control of the 35Spro as well as endogenous nitrite reductase (NiR) genes of tobacco because of the presence of a chimeric antisense gene (35Spro-RiN). All F1 progeny of a cross between homozygous H2 and 271 lines were sensitive to hygromycin and were chlorotic (a symptom of nitrogen deficiency). These phenotypes were accompanied by a reduction in the steady-state levels of Hyg and NiR transcripts. Transcriptional run-on experiments indicated, however, that while NiR silencing occurred post-transcriptionally, the hpt gene was inactivated at the transcriptional level; this was associated with increased methylation of the 35Spro of the hpt gene. NiR gene expression recovered uniformly to wild-type levels in first generation backcross (BC1) progeny that did not inherit the 271 locus. In contrast, hygromycin resistance was only partially and non-uniformly regained among adult BC1 plants. Moreover, substantial silencing of the hpt gene could persist into the BC2 generation. Genomic sequencing demonstrated that the meiotic heritability of hpt silencing in the absence of the 271 locus was correlated with cytosine methylation primarily at CpG and CpNpG residues. Despite this residual methylation, H2 loci weakened by an association with 271 did not acquire the ability to silence a 'naive' H2 locus. Fluorescence in situ hybridization revealed that the 271 locus was located at a telomere. The results strengthen the distinction between silencing effects involving homology restricted to coding or promoter regions, respectively. The former is a post-transcriptional process that is meiotically reversible; the latter is due to transcriptional inactivation and is associated with increased promoter methylation, which can lead to meiotically heritable reductions in target gene activity. The relevance of these data for the meiotic heritability of silencing, the non-transferability of silencing activity, and the basis of 271 silencing effects is discussed.

SummarySusceptibility to virus infection is decreased in a class I b-1,3-glucanase (GLU I)-de®cient mutant (TAG4.4) of tobacco generated by antisense transformation. TAG4.4 exhibited delayed intercellular traf®cking via plasmodesmata of a tobamovirus (tobacco mosaic virus), of a potexvirus (recombinant potato virus X expressing GFP), and of the movement protein (MP) 3a of a cucumovirus (cucumber mosaic virus). Monitoring the cell-to-cell movement of dextrans and peptides by a novel biolistic method revealed that the plasmodesmatal size exclusion limit (SEL) of TAG4.4 was also reduced from 1.0 to 0.85 nm. Therefore, GLU I-de®ciency has a broad effect on plasmodesmatal movement, which is not limited to a particular virus type. Deposition of callose, a substrate for b-1,3-glucanases, was increased in TAG4.4 in response to 32°C treatment, treatment with the fungal elicitor xylanase, and wounding, suggesting that GLU I has an important function in regulating callose metabolism. Callose turnover is thought to regulate plasmodesmatal SEL. We propose that GLU I induction in response to infection may help promote MP-driven virus spread by degrading callose.

The underlying mechanisms are thought to be highly conserved in evolution (2, 4). RNAi in animals is initiated by doublestranded RNAs (dsRNAs) similar in sequence to the transcribed region of target genes. These dsRNAs undergo endonucleolytic cleavage to generate 21-to 23-nt-long small interfering RNAs (siRNAs), which then promote RNA degradation (5-7) Remarkably, the silent state in transgenic plants and in C. elegans can spread from cell to cell and even systemically throughout the organism, implying the existence of mobile silencing signals (2, 8). Little is known about the chemical nature of these signals, but it seems likely that the sequence-specific component is an RNA (8-11). The finding that siRNA and dsRNA accumulate in silent tissues, together with studies of informative stable transformants and PTGS induced by RNA viruses, supports the view that dsRNAs and siRNAs have key roles in plant PTGS (12-14). Nevertheless, direct evidence that these or other RNAs can induce systemic PTGS or comprise silencing signals in plants is lacking.In the present study, we used a positive marker system and real-time monitoring of green fluorescent protein (GFP) expression to show that double-stranded siRNAs, large sense, antisense, and double-stranded RNAs delivered biolistically into plant cells trigger PTGS capable of spreading locally and systemically. The introduced siRNAs trigger the production of siRNAs derived from sequences both 3Ј and 5Ј of the inducing siRNAs. Our findings support the hypothesis that siRNAs themselves or intermediates induced by siRNAs could comprise silencing signals and are generated in a self-amplifying fashion. Materials and Methods

Most expression quantitative trait loci (eQTL) studies to date have been performed in heterogeneous brain tissues as opposed to specific cell types. To investigate the genetics of gene expression in adult human cell types from the central nervous system (CNS), we performed an eQTL analysis using single nuclei RNA-seq from 196 individuals in eight CNS cell types. We identified 6108 eGenes, a substantial fraction (43%, 2620 out of 6108) of which show cell-type specific effects, with strongest effects in microglia. Integration of CNS celltype eQTLs with GWAS revealed novel relationships between expression and disease risk for neuropsychiatric and neurodegenerative diseases. For most GWAS loci, a single gene colocalized in a single cell type providing new clues into disease etiology. Our findings demonstrate substantial contrast in genetic regulation of gene expression among CNS cell types and reveal genetic mechanisms by which disease risk genes influence neurological disorders..