In their natural environment, microbes organize into communities held together by an extracellular matrix composed of polysaccharides and proteins. We developed an in vivo labeling strategy to allow the extracellular matrix of developing biofilms to be visualized with conventional and super-resolution light microscopy. Vibrio cholerae biofilms displayed three distinct levels of spatial organization: cells, clusters of cells, and collections of clusters. Multiresolution imaging of living V. cholerae biofilms revealed the complementary architectural roles of the four essential matrix constituents: RbmA provided cell-cell adhesion, Bap1 allowed the developing biofilm to adhere to surfaces, and heterogeneous mixtures of Vibrio polysaccharide (VPS), RbmC, and Bap1 formed dynamic, flexible and ordered envelopes that encased the cell clusters.

Protein synthesis requires the accurate positioning of mRNA and tRNA in the peptidyl-tRNA site of the ribosome. Here we describe x-ray crystal structures of the intact bacterial ribosome from Escherichia coli in a complex with mRNA and the anticodon stem-loop of P-site tRNA. At 3.5-Å resolution, these structures reveal rearrangements in the intact ribosome that clamp P-site tRNA and mRNA on the small ribosomal subunit. Binding of the anticodon stem-loop of P-site tRNA to the ribosome is sufficient to lock the head of the small ribosomal subunit in a single conformation, thereby preventing movement of mRNA and tRNA before mRNA decoding.

SUMMARY Telomeres, repetitive DNA sequences at chromosome ends, are shielded against the DNA damage response (DDR) by the shelterin complex. To understand how shelterin protects telomere ends, we investigated the structural organization of telomeric chromatin in human cells using super-resolution microscopy. We found that telomeres form compact globular structures through a complex network of interactions between shelterin subunits and telomeric DNA, and not by DNA methylation, histone deacetylation or histone trimethylation at telomeres and subtelomeric regions. Mutations that abrogate shelterin assembly or removal of individual subunits from telomeres cause up to a 10-fold increase in telomere volume. Decompacted telomeres become more accessible to telomere-associated proteins and accumulate DDR signals. Recompaction of telomeric chromatin using an orthogonal method displaces DDR signals from telomeres. These results reveal the chromatin remodeling activity of shelterin and demonstrate that shelterin-mediated compaction of telomeric chromatin provides robust protection of chromosome ends against the DDR machinery.

In their natural environment, microbes organize into communities held together by an extracellular matrix composed of polysaccharides and proteins. We developed an in vivo labeling strategy to allow the extracellular matrix of developing biofilms to be visualized with conventional and superresolution light microscopy. Vibrio cholerae biofilms displayed three distinct levels of spatial organization: cells, clusters of cells, and collections of clusters. Multiresolution imaging of living V. cholerae biofilms revealed the complementary architectural roles of the four essential matrix constituents: RbmA provided cell-cell adhesion, Bap1 allowed the developing biofilm to adhere to surfaces, and heterogeneous mixtures of Vibrio polysaccharide (VPS), RbmC, and Bap1 formed dynamic, flexible and ordered envelopes that encased the cell clusters. Microbes within biofilms are more resistant to antibiotics, to immune clearance, and to osmotic, acid and oxidative stresses compared to planktonic cells (1-7). Despite advances in identifying the polysaccharide and proteinaceous constituents of the biofilm extracellular matrix, the mechanisms by which these factors yield a mechanically defined and spatially organized biofilm are largely unknown (8-10). The small size of most microbes has precluded multi-scale optical investigation of living biofilms. Vibrio cholerae biofilm formation involves the production of Vibrio polysaccharide (VPS) and three matrix proteins (RbmA, RbmC, and Bap1) predicted to contain carbohydrate-binding domains (fig. S1A) (11-13). To investigate the molecular mechanisms of biofilm development, we used a V. cholerae rugose variant with increased capacity to form biofilms (11). We inserted Myc, FLAG, and HA (Human influenza hemagglutinin) epitopes into its genome at the 3' ends of * To whom correspondence should be addressed.