We identify and validate from a large corpus constraints from conjunctions on the positive or negative semantic orientation of the conjoined adjectives. A log-linear regression model uses these constraints to predict whether conjoined adjectives are of same or different orientations, achieving 82% accuracy in this task when each conjunction is considered independently. Combining the constraints across many adjectives, a clustering algorithm separates the adjectives into groups of different orientations, and finally, adjectives are labeled positive or negative. Evaluations on real data and simulation experiments indicate high levels of performance: classification precision is more than 90% for adjectives that occur in a modest number of conjunctions in the corpus.

We identify and validate from a large corpus constraints from conjunctions on the positive or negative semantic orientation of the conjoined adjectives. A log-linear regression model uses these constraints to predict whether conjoined adjectives are of same or different orientations, achieving 82% accuracy in this task when each conjunction is considered independently. Combining the constraints across many adjectives, a clustering algorithm separates the adjectives into groups of different orientations, and finally, adjectives are labeled positive or negative. Evaluations on real data and simulation experiments indicate high levels of performance: classification precision is more than 90% for adjectives that occur in a modest number of conjunctions in the corpus.

Subjectivity is a pragmatic, sentence-level feature that has important implications for texl processing applicalions such as information exlractiou and information iclricwd. We study tile elfeels of dymunic adjectives, semantically oriented adjectives, and gradable ad.ieclivcs on a simple subjectivity classiiicr, and establish lhat lhcy arc strong predictors of subjectivity. A novel trainable mclhod thai statistically combines two indicators of gradability is presented and ewlhlalcd, complementing exisling automatic Icchniques for assigning orientation labels.

The immense growth in the volume of research literature and experimental data in the field of molecular biology calls for efficient automatic methods to capture and store information. In recent years, several groups have worked on specific problems in this area, such as automated selection of articles pertinent to molecular biology, or automated extraction of information using natural-language processing, information visualization, and generation of specialized knowledge bases for molecular biology. GeneWays is an integrated system that combines several such subtasks. It analyzes interactions between molecular substances, drawing on multiple sources of information to infer a consensus view of molecular networks. GeneWays is designed as an open platform, allowing researchers to query, review, and critique stored information.

We present an automated system for assigning protein, gene, or mRNA class labels to biological terms in free text. Three machine learning algorithms and several extended ways for defining contextual features for disambiguation are examined, and a fully unsupervised manner for obtaining training examples is proposed. We train and evaluate our system over a collection of 9 million words of molecular biology journal articles, obtaining accuracy rates up to 85%.