BackgroundMicroRNAs (miRNAs) have recently been shown to play important roles in development of the immune system and in fine-tuning of immune responses. Human miR-146 family members are known as inflammation-inducible miRNAs involved in negative feedback regulation of Toll-like receptor (TLR) signalling. Dysregulation of the miR-146 family has often been linked to inflammatory diseases and malignancies. This study reports on miR-146a and miR-146b as infection-inducible miRNAs in zebrafish, which has emerged as a model species for human disease.ResultsUsing a custom-designed microarray platform for miRNA expression we found that both members of the zebrafish miR-146 family, miR-146a and miR-146b, were commonly induced by infection of zebrafish embryos with Salmonella typhimurium and by infection of adult fish with Mycobacterium marinum. The induction of these miRNAs was confirmed by Taqman miRNA assays. Subsequently, we used zebrafish embryos, in which adaptive immunity is not yet active, as an in vivo system to investigate the role of miR-146 in the innate immune response to S. typhimurium infection. Knockdown of traf6 and use of myd88 mutants demonstrated that the induction of miR-146a and miR-146b by S. typhimurium infection was affected by disruption of the MyD88-Traf6 pathway that mediates transduction of TLR signals and cytokine responses. In turn, knockdown of miR-146 itself had no major effects on the expression of known targets of MyD88-Traf6 signalling. Instead, RNA sequencing analysis showed that miR-146 knockdown led to an increased induction of six members of the apolipoprotein gene family in S. typhimurium-infected embryos.ConclusionBased on microarray analysis and Taqman miRNA assays we conclude that members of the miR-146 family, which is highly conserved between fish and human, are induced by bacterial infection in zebrafish in a MyD88 and Traf6 dependent manner. The combined knockdown of miR-146a and miR-146b in zebrafish embryos infected with S. typhimurium had no major effect on the expression of pro-inflammatory genes and transcription factors known to be downstream of the MyD88-Traf6 pathway. In contrast, apolipoprotein-mediated lipid transport emerged as an infection-inducible pathway under miR-146 knockdown conditions, suggesting a possible function of miR-146 in regulating lipid metabolism during inflammation.

Chlamydia, the most common sexually transmitted pathogen, is an exquisitely adapted Gram-negative obligate intracellular bacterium. Intracellular Chlamydia trachomatis replicate in a specialized vacuole, termed inclusion, which shields the bacterium from antimicrobial immunity of the host cells and acts as a signalling interface. Previously it was shown that members of the interferon induced guanylate binding protein (mGBP) family, in particular murine GBP1 and mGBP2, were found to accumulate at the bacterial inclusions, similar to previously published recruitment of GBPs to the parasitophorous vacuole of Toxoplasma gondii. Here, we provide a wide comparison of mGBPs roles within the host cell in the context of Chlamydia and Toxoplasma infection. By confocal microscopy on fixed and living infected cells we show localization of mGBP3, mGBP6, mGBP7, mGBP9, and mGBP10, in addition to mGBP1 and mGBP2, at chlamydia inclusions. In time lapse videos using GFP expressing Chlamydia we show rapid and transient dynamics of mGBP9 accumulation onto chlamydia inclusions. Taken together this study reveals a broad activation of mGBP recruitment towards Chlamydia trachomatis inclusions after infection and provides evidence for time limited action of mGBP9 at the chlamydia inclusion.

Interferon-γ (IFNγ) signaling induces high expression of immunomodulatory molecules in most cell types. Among these molecules, the members of the murine guanylate-binding protein (mGBP) family comprise a group of eleven proteins (mGBP1-mGBP11) shown to have important functions in cell-autonomous immunity. Upon IFNγ stimulation, mGBPs localize in vesicle-like structures distributed within the cytoplasm. Previous studies have shown that after infection with several intracellularly replicating pathogens, mGBPs rapidly relocate towards the pathogen-containing vacuoles (PCV), such as the parasitophorous vacuole (PV) of Toxoplasma gondii or the inclusions of Chlamydia trachomatis. Accumulation of mGBP2 at the PV membrane leads to loss of membrane integrity and subsequent restriction of parasite replication. Although mGBP proteins share a high sequence identity, differences in localization frequencies could be detected. For instance, mGBP1 and mGBP2 show the highest frequencies of recruitment to both Toxoplasma and Chlamydia PCVs. However, mGBP9 recruitment was more frequent to chlamydial inclusions than to T. gondii PVs. Thus, the importance of individual mGBPs might vary depending on the type of the pathogen. To analyze these findings in more detail, we started with the generation of mgbp9−/− cell- and mouse lines. Therefore, the CRISPR/Cas9 gene editing system with homologous directed integration of a single-stranded oligodesoxynucleotide is used to generate mGBP9 deficient ES cells for mouse and cell line development. In-depth analyzes of mgbp9−/− cells and mice in T. gondii and C. trachomatis infection will lead to a better understanding of immunity against intracellular pathogens.