Aim: Establishment of ruminal bacterial community in dairy calves. Methods and Results: Rumen bacterial community was analysed on 6 calves bred according to commercial practices from day one to weaning at day 83 of age, using 454 16S rRNA-based pyrosequencing. Samples taken at day 1 did not produce amplicons. Analysis of data revealed a three-stage implantation process with a progressive but important shift of composition. At day 2, the bacterial community was mainly composed of Proteobacteria (70%) and Bacteroidetes (14%), and Pasteurellaceae was the dominant family (58%). The bacterial community abruptly changed between days 2 and 3, and until day 12, dominant genera were Bacteroides (21%), Prevotella (11%), Fusobacterium (5%) and Streptococcus (4%). From 15 to 83 days, when solid food intake rapidly increased, Prevotella became dominant (42%) and many genera strongly decreased or were no longer detected. A limited number of bacteria genera correlated with feed intake, rumen volatile fatty acids and enzymatic activities. Conclusion: The ruminal bacterial community is established before intake of solid food, but solid food arrival in turn shapes this community. Significance and Impact of the Study: This study provides insight into the establishment of calves' rumen bacterial community and suggests a strong effect of diet.

The objectives of this study were to evaluate the capacity of 2 dietary feed additives, sodium bicarbonate and live yeast Saccharomyces cerevisiae (strain Sc 47), in optimizing ruminal pH in dairy cows and to determine their modes of action. Three early lactating Holstein cows, fitted with ruminal cannulas, were allocated in a 3 x 3 Latin square design. They were given a total mixed ration as control diet (CD) at a daily feeding rate of 28.0 kg of dry matter (DM)/cow supplemented with 150 g/d of sodium bicarbonate (SBD) or 5 g/d of live yeast (YD) during a 21-d experimental period (14 d of diet adaptation, 4 consecutive days of measurement and sampling and 3 d of transition). The pH and redox potential (E(h)) were measured from 1 h before feeding to 8 h after feeding at 1-h intervals, and samples of ruminal fluid were taken at 0, 2, 4, 6, and 8 h after feeding for the determination of volatile fatty acids and lactate concentrations. Total tract apparent digestibility of the diet was also determined. Ruminal pH fluctuated between 6.53 at feeding and 5.57 at 5 h postfeeding. Mean pH was greater with SBD (6.21) and YD (6.14) compared with CD (5.94), showing that both additives had a pH stabilization effect. The E(h) varied from -88 mV at 1 h before feeding to -165 mV at 1 h after feeding. Mean E(h) and Clark's Exponent (rH) were lower with YD (-149 mV and 7.31, respectively) than with SBD (-137 mV and 7.85, respectively) and CD (-115 mV and 8.05, respectively), indicating that the yeast strengthened the reducing power of the milieu. Total volatile fatty acids were greater in SBD (95.3 mM) and YD (99.4 mM) compared with CD (85.3 mM). Acetate concentration was greater in SBD (60.8 mM) and YD (59.1 mM) compared with CD (53.2 mM). Propionate concentration was greater in YD (25.8 mM) than in SBD (20.0 mM) and CD (18.0 mM). Butyrate remained constant between diets. Mean total lactate concentrations were 16.5, 12.2, and 5.4 mM for CD, SBD, and YD, respectively, with a 67% decrease with YD. Total tract organic matter digestibility was greater for YD (66.6%) compared with SBD (61.7%) and CD (62.2%). The neutral detergent fiber digestibility was greater with YD (41.6%) compared with SBD (34.3%) and CD (29.6%), whereas acid detergent fiber digestibility was greatest in YD (32.3%), intermediate in SBD (24.4%), and lowest in CD (18.1%). By inducing a lower ruminal E(h) and rH, live yeast prevented accumulation of lactate and allowed better fiber digestion, whereas sodium bicarbonate seemed to act only as an exogenous buffer.

Data from birth to slaughter of cull cows allowed using a PCA-based approach coupled with the iterative K-means algorithm the identification of three rearing practices classes. The classes were different in their carcass characteristics. Old cows raised mainly on pasture have better carcass characteristics, while having an equivalent tenderness, juiciness, flavor, intramuscular fat content, and pHu to those fattened with hay or haylage. The Longissimus thoracis muscle of the cows raised on pasture (with high physical activity) showed greater proportions of IIA fibers at the expense of the fast IIX ones. Accordingly, the meat of these animals have better color characteristics. Superoxide dismutase (SOD1) and αB-crystallin quantified by Dot-Blot were the only other biomarkers to be more abundant in "Grass" class compared to "Hay" and "Haylage" classes. The relationships between the biomarkers and the 6 carcass and 11 meat quality traits were investigated using multiple regression analyses per rearing practices. The associations were rearing practice class and phenotype trait-dependent. ICDH and TP53 were common for the three classes, but the direction of their entrance was different. In addition, rearing practices and carcass traits were not related with Hsp70-Grp75 and μ-calpain abundances. The other relationships were specific for two or one rearing practices class. The rearing practices dependency of the relationships was also found with meat quality traits. Certain proteins were for the first time related with some beef quality traits. MyHC-IIx, PGM1, Hsp40, ICDH, and Hsp70-Grp75 were common for the three rearing practices classes and retained to explain at list one beef quality trait. A positive relationship was found between PGM1 and hue angle irrespective of rearing practices class. This study confirms once again that production-related traits in livestock are the result of sophisticated biological processes finely orchestrated during the life of the animal and soon after slaughter.

The objectives of this study were to characterize the establishment of ruminal fermentation and enzymatic activities in dairy calves from birth to weaning (d 83). Six Holstein calves, immediately separated from their mother at birth, were fed colostrum for 3 d after birth, and thereafter milk replacer, starter pelleted concentrate, and hay until d 83 of age. Ruminal samples were collected from each calf every day for the first 10 d, and additionally at d 12, 15, 19, 22, 26, 29, 33, 36, 40, 43, 47, 50, 55, 62, 69, and 83. Ruminal samples were collected 1h after milk feeding with a stomach tube. The pH and redox potential (E(h)) were immediately measured. Samples were kept for further determination of ammonia nitrogen (NH(3)-N) and volatile fatty acid (VFA) concentrations, and xylanase, amylase, urease, and protease activities. Ruminal pH averaged 6.69, 5.82, and 6.34, from d 1 to 9, d 10 to 40, and d 43 to 83 of age, respectively. At first day of life, the ruminal E(h) value was positive (+224 mV). From d 2 to 9, d 10 to 40, and d 43 to 83 of age, ruminal E(h) averaged -164, -115, and -141 mV, respectively. From d 1 to 3, d 4 to 22, and d 26 to 83 of age, NH(3)-N concentration averaged 60.1, 179.8, and 58.2 mg/L, respectively. No VFA were detected in ruminal samples collected on d 1 of life of calves. From d 2 to 10 and d 12 to 83 of age, ruminal total VFA concentration averaged 19.5 and 84.4mM, respectively. Neither ruminal xylanase or amylase activities were observed at d 1 of age. From d 5 to 15 and d 19 to 83 of age, the xylanase activity averaged 182.2 and 62.4 μmol of sugar released per hour per gram of ruminal content dry matter (DM), respectively. From d 5 to 83 of age, the amylase activity reached 35.4 μmol of sugar released per hour per gram of ruminal content DM. The ruminal ureolytic activity was observed with an average value of 6.9 μg of NH(3)-N released per minute per gram of ruminal content DM over the 83-d experimental period. From d 1 to 4 and d 5 to 83 of age, the proteolytic activity was 8.2 and 27.9 optical density units per hour per gram of ruminal content DM, respectively. The fermentative and enzymatic activities were rapidly established in the rumen from d 2 after birth. Most parameters did not evolve further after 1 mo of age.

This study describes the development of the rabbit caecum microbiota and its metabolic activities from the neonatal (day 2) until the subadult period (day 70). The caecal microbiota was analysed using 16S rRNA gene approaches coupled with capillary electrophoresis single-stranded conformation polymorphism (CE-SSCP) and qPCR. At day 2, rabbits harboured population levels up to 8.4, 7.2 and 7.4 log 10 copy number g À1 full caecum of the total bacteria, Bacteroides-Prevotella

No abstract

A bacteria library was constructed from the caecum of a rabbit maintained under standard conditions. The complete gene 16S rRNA gene was sequenced. The 228 clones obtained were distributed in 70 operational taxonomic units (OTUs). The large majority of the OTUs were composed of one or two clones and seven OTUs contained half of the sequences. Fourteen sequences had high similarity to the sequence already registered in databases (threshold of 97%). Only one of these sequences has been identified as Variovorax sp. (99% identity). Units were distributed mainly (94%) in the Firmicutes phylum. Three sequences were related to Bacteroidetes. Nine clusters were defined in the phylogenic tree. A great diversity of caecal bacteria of the rabbit was shown. Half of the sequences generated in this library were distributed in the phylogenetic tree near the sequences characterized previously in rabbit caecum (potential core species), and the other half of the sequences were well separated (satellite species).

No abstract