Species are impacted by climate change at both ecological and evolutionary time scales. Studies in northern continents have provided abundant evidence of dramatic shifts in distributions of species subsequent to the last glacial maximum (LGM), particularly at high latitudes. However, little is known about the history of southern continents, especially at high latitudes. South America is the only continent, other than Antarctica, that extends beyond 40 degrees S. Genetic studies of a few Patagonian species have provided seemingly conflicting results, indicating either postglacial colonization from restricted glacial refugia or persistence through glacial cycles and in situ differentiation. Using mitochondrial DNA sequences of 14 species of sigmodontine rodents, a major faunal ensemble of Patagonia and Tierra del Fuego, we show that at least nine of these species bear genetic footprints of demographic expansion from single restricted sources. However, timing of demographic expansion precedes the LGM in most of these species. Four species are fragmented phylogeographically within the region. Our results indicate that (i) demographic instability in response to historical climate change has been widespread in the Patagonian-Fueguian region, and is generally more pronounced at high latitudes in both southern and northern continents; (ii) colonization from lower latitudes is an important component of current Patagonian-Fueguian diversity; but (iii) in situ differentiation has also contributed to species diversity.

The Patagonian and Fuegian regions host a rich assemblage of sigmodontine rodents. In this article, we present a synthesis of our current understanding of their late Neogene diversification. Sigmodontine diversity in this area encompasses 16 genera and about 24 species; however, most belong to the tribes Abrotrichini and Phyllotini. Several abrotrichine genera are endemic to the region, whereas phyllotines are represented mainly by species widely distributed outside Patagonia. Two main ecogeographical assemblages of sigmodontines can be recognized: a lowland northeastern group with species mostly associated with shrub formations of the Monte Desert, and a medium to highland southwestern group of typical Patagonian elements, including several abrotrichines and a diversity of Andean forms. The pattern of latitudinal decline in species' number in sigmodontine rodents is more complex than the traditionally envisioned north to south pauperization; southern mainland Patagonia is as poor in species' number as is northern Tierra del Fuego (six species), suggesting that insularity is insufficient to explain the island assemblage. Glacial cycles may have had a major role in the control of sigmodontine richness. The fossil Fuego–Patagonian sigmodontine record is restricted to late Pleistocene–Holocene times. Remarkable events include regional extinctions of several widespread southwestern species during the latest Holocene and a reworking of micromammal assemblages, probably as a result of anthropogenic environmental changes. Two main phylogeographical patterns can be broadly associated with the northeastern and southwestern groups. The northeastern assemblage basically comprises species without phylogeographical structure, whereas the southwestern group involves several lineages with deep phylogeographical breaks. The current Fuego–Patagonian sigmodontine assemblage is mainly composed of species that colonized the area from lower latitudes and by others that have differentiated in situ. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 103, 495–513. La región Patagónico‐Fueguina comporta un rico ensamble de roedores sigmodontinos. En este trabajo presentamos una síntesis del conocimiento sobre los procesos de diversificación del grupo durante el Neógeno tardío. La diversidad de sigmodontinos comprende 16 géneros y cerca de 24 especies; sin embargo, la mayor parte de las mismas pertenecen a las tribus Abrotrichini y Phyllotini. Varios géneros de abrotriquinos son endémicos de la región, mientras que los filotinos están en general representados por especies de amplia distribución fuera de Patagonia. Se pueden reconocer dos grandes ensambles eco‐geográficos de sigmodontinos: un grupo nor‐oriental de tierras bajas, con especies mayoritariamente asociadas a las formaciones vegetales arbustivas del Monte, y otro sud‐occidental de tierras de mediana a alta elevación, que agrupa típicos elementos patagónicos, incluyendo abrotriquinos y una diversidad de formas andinas. El patrón de disminución ...

Almost all large carnivorans (Carnivora; > 20 kg) that inhabited South America became extinct around the Late Pleistocene–Early Holocene transition. Two exceptions were species of coyote‐sized Dusicyon, one insular (D.  australis) and one continental (D.  avus). The extinction of the former is a resolved matter, but that of D. avus, found in the Patagonian and Pampean regions, is still poorly understood. Using the Gaussian‐Resampled Inverse‐Weighted McInerny method we present new radiocarbon evidence indicating that its disappearance occurred in very recent times (about 324–496 years cal bp). We found no evidence to support a role for hybridization with domestic dogs in causing the extirpation of this fox. Climatic change may have reduced its distributional range, as has happened with other mammals, although not to the extent of explaining its extinction. Climatic change, however, coupled with increased anthropogenic impacts such as hunting, domestic dogs, and/or other aspects relating to the impact of European colonization in South America's southern cone, were the probable main drivers of the recent extinction of D. avus.

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A multilocus perspective on the phylogenetic relationships and diversification of rodents of the tribe Abrotrichini (Cricetidae: Sigmodontinae). 43,[443][444][445][446][447][448][449][450][451][452][453][454] Abrotrichini is a recently defined and diagnosed tribe of Sigmodontinae with a complex taxonomy. Abrotrichine genera, Abrothrix (including Chroeomys), Chelemys, Geoxus, Notiomys and Pearsonomys, are mostly distributed in the central and southern Andes and adjacent lowlands and show terrestrial and fossorial habits. Recent studies have evidenced some incongruence between current taxonomy and abrotrichine phylogeny, such as the polyphyly of Chelemys and paraphyly of Geoxus respect to Pearsonomys. We used DNA sequence data of six loci (one mitochondrial and five nuclear) to resolve the relationships within the tribe. Independent and combined analyses of these loci were carried out using parsimony, maximum likelihood and Bayesian inference. Estimates of divergence time of the main lineages of abrotrichines were calculated with a molecular clock using as calibration, a fossil recently found. The concatenated data set increased the resolution and defined the relationships within the tribe. Our phylogenetic analyses corroborate that Abrothrix is sister of a clade containing the long-clawed abrotrichines. We recovered two main clades within Abrothrix that match morphologic variation and geographic distribution of its species. In addition, we corroborated the lack of monophyly of Chelemys and the lack of monophyly of Geoxus. We discuss different taxonomic scenarios to abrotrichine classification reflects the phylogenetic relationships obtained in this study. Our molecular clock estimated the Abrotrichini crown age to be around the early Pliocene (4.4 Ma) and suggest that the tribe diversified over a short period of time.