Rice bacterial blight caused by Xanthomonas oryzae pv. oryzae (Xoo) is one of the most destructive rice diseases worldwide. Therefore, in addition to breeding disease-resistant rice cultivars, it is desirable to develop effective biocontrol agents against Xoo. Here, we report that a soil bacterium Pseudomonas taiwanensis displayed strong antagonistic activity against Xoo. Using matrix-assisted laser desorption/ionization imaging mass spectrometry, we identified an iron chelator, pyoverdine, secreted by P. taiwanensis that could inhibit the growth of Xoo. Through Tn5 mutagenesis of P. taiwanensis, we showed that mutations in genes that encode components of the type VI secretion system (T6SS) as well as biosynthesis and maturation of pyoverdine resulted in reduced toxicity against Xoo. Our results indicated that T6SS is involved in the secretion of endogenous pyoverdine. Mutations in T6SS component genes affected the secretion of mature pyoverdine from the periplasmic space into the extracellular medium after pyoverdine precursor is transferred to the periplasm by the inner membrane transporter PvdE. In addition, we also showed that other export systems, i.e., the PvdRT-OpmQ and MexAB-OprM efflux systems (for which there have been previous suggestions of involvement) and the type II secretion system (T2SS), are not involved in pyoverdine secretion.

Far-red (FR) light-coupled jasmonate (JA) signaling is necessary for plant defense and development. FR insensitive 219 (FIN219) is a member of the Gretchen Hagen 3 (GH3) family of proteins in Arabidopsis and belongs to the adenylate-forming family of enzymes. It directly controls biosynthesis of jasmonoyl-isoleucine in JA-mediated defense responses and interacts with FIN219-interacting protein 1 (FIP1) under FR light conditions. FIN219 and FIP1 are involved in FR light signaling and are regulators of the interplay between light and JA signaling. However, how their interactions affect plant physiological functions remains unclear. Here, we demonstrate the crystal structures of FIN219-FIP1 while binding with substrates at atomic resolution. Our results show an unexpected FIN219 conformation and demonstrate various differences between this protein and other members of the GH3 family. We show that the rotated C-terminal domain of FIN219 alters ATP binding and the core structure of the active site. We further demonstrate that this unique FIN219-FIP1 structure is crucial for increasing FIN219 activity and determines the priority of substrate binding. We suggest that the increased FIN219 activity resulting from the complex form, a conformation for domain switching, allows FIN219 to switch to its high-affinity mode and thereby enhances JA signaling under continuous FR light conditions. jasmonate response | far-red light | signaling cross-talk | adenylation enzyme | phytohormone F ar-red (FR) insensitive 219 (FIN219) (1), also known as jasmonate (JA) resistant 1 (JAR1; AtGH3.11) (2), is a member of the auxin-regulated Gretchen Hagen 3 (GH3) family of proteins (3). The GH3 family in Arabidopsis is composed of 19 distinct proteins and is also conserved in plants such as rice (4-6), tomato (7,8), and maize (9), with 13, 15, and 13 members, respectively. Phylogenetically, the GH3 family is classified as part of the adenylate-forming enzyme superfamily, which contains proteins such as firefly luciferase-like enzymes (10). This diverse group of enzymes catalyzes the addition of AMP to carboxyl groups on a wide variety of substrates and typically contains three conserved motifs that form a binding pocket for ATP and AMP substrate intermediates (11). GH3 proteins regulate the activity of plant hormones through amino acid conjugation and have a substantial effect on plant metabolism and physiology (12). For example, FIN219 catalyzes the conjugation of isoleucine (Ile) to JA, forming jasmonoyl-isoleucine (JA-Ile). This reaction results in the degradation of the transcriptional repressor JA-ZIM (zinc-finger protein expressed in inflorescence meristem) domain (JAZ) proteins and the subsequent activation of downstream transcriptional responses (13).FIN219 has been identified in suppressor screenings using a temperature sensitive constitutive photomorphogenic 1 (cop1) mutant line. It is involved in FR light-mediated inhibition of hypocotyl elongation and regulates light inactivation of COP1 activity (1). Furthermore, FIN219 acts as a ...

In this study, nanoscale zero-valent iron (NZVI) particles were synthesized and utilized to integrate with surfactant and electrokinetics for the remediation of perchloroethylene (PCE). The average particle diameter and specific surface area of the lab-synthesized iron particles were 109.3 nm and 129.7 m 2 g -1 , respectively. Experiments were performed in a glass sandbox to simulate the transport and degradation of PCE in the aquifer. The results of the transport tests revealed that the PCE concentrations at the bottom layer was higher than those at the mid and upper layers, and that the surfactant Tween 80 showed its conspicuous mobilization for PCE in the aquifer. As the results of the degradation tests showed, NZVI activity could be promoted by electrokinetics that enhanced the remediation performance of PCE contaminated groundwater by the NZVI reactive barrier. Chlorinated byproducts were not detected during the degradation tests, that is, PCE was completely dechlorinated by NZVI in the reactive barrier. The information collected from this study will be useful for further application of the NZVI reactive barrier system to remediate the aquifers contaminated by the chlorinated solvents.

The Gram-negative bacterium Pseudomonas taiwanensis is a novel bacterium that uses shrimp shell waste as its sole sources of carbon and nitrogen. It is a versatile bacterium with potential for use in biological control, with activities including toxicity toward insects, fungi, and the rice pathogen Xanthomonas oryzae pv.oryzae (Xoo). In this study, the complete 5.08-Mb genome sequence of P. taiwanensis CMS was determined by a combination of NGS/Sanger sequencing and optical mapping. Comparison of optical maps of seven Pseudomonas species showed that P. taiwanensis is most closely related to P. putida KT 2400. We screened a total of 11,646 individual Tn5-transponson tagged strains to identify genes that are involved in the production and regulation of the iron-chelator pyoverdine in P. taiwanensis, which is a key anti-Xoo factor. Our results indicated that the two-component system (TCS) EnvZ/OmpR plays a positive regulatory role in the production of pyoverdine, whereas the sigma factor RpoS functions as a repressor. The knowledge of the molecular basis of the regulation of pyoverdine by P. taiwanensis provided herein will be useful for its development for use in biological control, including as an anti-Xoo agent.