Bioclimatics is an ancient science that was once neglected by many ecologists. However, as climate changes have attracted increasing attention, scientists have reevaluated the relevance of bioclimatology and it has thus become essential for exploring climate changes. Because of the rapidly growing importance of bioclimatic models in climate change studies, we evaluated factors that influence plant bioclimatology, constructed and developed bioclimatic models, and assessed the precautionary effects of the application of the models. The findings obtained by sequentially reviewing the development history and importance of bioclimatic models in climate change studies can be used to enhance the knowledge of bioclimatic models and strengthen their ability to apply them. Consequently, bioclimatic models can be used as a powerful tool and reference in decision-making responses to future climate changes. The objectives of this study were to (1) understand how climatic factors affect plants; (2) describe the sources, construction principles, and development of early plant bioclimatic models (PBMs); and (3) summarize the recent applications of PBMs in climate change research.
Eutrema bulbiferum, a unique new species of Brassicaceae found in the limestone areas of Longshan and Jishou, Hunan, China, is described and illustrated. This species is most similar to E. tenue and E. yunnanense, but can be easily distinguished by its rosulate fleshy bulbils in the leaf axil or near the stem base, fewer ovules per ovary, slightly 4-angled short wand-like silique, and bended silique apex with a beak. E. bulbiferum is categorized into Eutrema by phylogenetic analysis based on the nuclear internal transcribed spacer (ITS). It is also clearly separated from E. tenue and E. yunnanense by the results of both phylogenetic analysis and Principal Component Analysis (PCA) based on morphometric characters.
BackgroundCalanthe masuca and C. sinica are two genetically closely related species in Orchidaceae. C. masuca is widely distributed in Asia, whereas C. sinica is restricted to Yunnan and Guangxi Provinces in southwest China. Both play important roles in horticulture and are under the pressure of population decline. Understanding their genetic background can greatly help us develop effective conservation strategies for these species. Simple sequence repeats (SSRs) are useful for genetic diversity analysis, presumably providing key information for the study and preservation of the wild populations of the two species we are interested in.ResultsIn this study, we performed RNA-seq analysis on the leaves of C. masuca and C. sinica, obtaining 40,916 and 71,618 unigenes for each species, respectively. In total, 2,019/3,865 primer pairs were successfully designed from 3,764/7,189 putative SSRs, among which 197 polymorphic SSRs were screened out according to orthologous gene pairs. After mononucleotide exclusion, a subset of 129 SSR primers were analysed, and 13 of them were found to have high polymorphism levels. Further analysis demonstrated that they were feasible and effective against C. masuca and C. sinica as well as transferable to another species in Calanthe. Molecular evolutionary analysis revealed functional pathways commonly enriched in unigenes with similar evolutionary rates in the two species, as well as pathways specific to each species, implicating species-specific adaptation. The divergence time between the two closely related species was tentatively determined to be 3.42 ± 1.86 Mya.ConclusionsWe completed and analysed the transcriptomes of C. masuca and C. sinica, assembling large numbers of unigenes and generating effective polymorphic SSR markers. This is the first report of the development of expressed sequence tag (EST)-SSR markers for Calanthe. In addition, our study could enable further genetic diversity analysis and functional and comparative genomic studies on Calanthe.Electronic supplementary materialThe online version of this article (10.1186/s12864-018-5161-4) contains supplementary material, which is available to authorized users.
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