In Lake Tanganyika, blooms of nitrogen-fixing (diazotrophic) cyanobacteria emerge, when the upper water column re-stratifies after a period of upwelling and convective mixing. During this seasonal transition, diazotrophic cyanobacteria exploit the abundant phosphate and fix nitrogen after other phytoplankton taxa have consumed the available nitrate. However, it remains less clear, which mechanisms favour diazotrophic cyanobacteria under more heavily stratified conditions with lower levels of excess phosphate and persistent nitrate-depletion. Here, we collected profiles of physicochemical parameters, nutrients and photo-pigments, as well as the medium- to large-sized phytoplankton community during two lake-wide cruises to elucidate to what extent the abundance of diazotrophic cyanobacteria in Lake Tanganyika may be controlled by the nitrate resupply through the thermocline into the euphotic zone. At stations where nitrate was depleted, but phosphate remained available near the surface, high densities of diazotrophic cyanobacteria were associated with a low nitrate supply to surface waters. Our data provide first support for two conceptual scenarios, where the relative position of the thermocline and the euphotic depth may create a functional niche for diazotrophic cyanobacteria: when the upward transport of nitrate into the euphotic zone is reduced by a subjacent thermocline, diazotrophic cyanobacteria, comprising Dolichospermum and Anabaenopsis, are key players in the medium-to large-sized phytoplankton community. By contrast, a thermocline located within the euphotic zone allows for a rapid vertical transport of nitrate for a thriving nitrate-assimilating phytoplankton community that evidently outcompetes diazotrophic cyanobacteria. This study highlights that, under nitrogen-depleted conditions, diazotrophic cyanobacteria can also grow in response to a reduced nutrient resupply to the productive surface waters.

Abstract. In spite of the fact that cyanobacterial blooms are classically associated with high nutrient loadings, there is also abundant evidence revealing that nitrogen fixing cyanobacteria (diazotrophs) can prevail under oligotrophic conditions. The mechanisms favouring diazotrophs in oligotrophic water bodies remain, however, poorly resolved. Here we analyse biogeochemical and ecological factors regulating the distribution of nitrogen fixing cyanobacteria in the oligotrophic Lake Tanganyika using sensor profiles of hydrodynamic conditions, nutrient and pigment analyses, as well as phytoplankton community assessment. During periods of stable or re-establishing water column stratification, we find evidence that the location of the thermocline and the euphotic depth can create a functional niche for diazotrophic cyanobacteria: Nitrogen limitation provides an ecological advantage for an apparent mutualistic interaction between diazotrophs and diatoms when the upward transport of nitrate into the euphotic zone is reduced by a subjacent thermocline. Diazotrophs, comprising the filamentous genera Dolichospermum and Anabaenopsis, are key players under these conditions (up to 41.7 % of phytoplankton community), while they are rare otherwise. By contrast, a thermocline located within the euphotic zone allows rapid vertical transport of nitrate for a thriving nitrate assimilating phytoplankton community that evidently outcompetes diazotrophs. Finally, multiple observations of relatively high diazotroph densities in the upwelling region in the South of Lake Tanganyika imply that they may additionally thrive under high nutrient conditions, when nitrogen is heavily deficient with respect to phosphorous. This study highlights that, under nitrogen deficient conditions, cyanobacterial blooms may form in response to reduced nutrient fluxes to the productive surface waters.

Food security in a warming world is a grave concern for rapidly growing impoverished populations. Low-latitude inland fisheries provide protein for millions of rural poor, yet the impacts of high-frequency climate oscillations on these aquatic ecosystems are unknown. Here, we present a sub-annual–to–annual resolution paleolimnological reconstruction of upwelling, productivity, and algal composition at Lake Tanganyika, one of Africa’s largest landlocked fisheries. The data reveal increases in diatom production at centennial-scale solar irradiance maxima, and interannual variability in upwelling linked to La Niña. Our study shows that interactions between global climatic controls and El Niño–Southern Oscillation teleconnections exert profound influences on the foundation of Lake Tanganyika’s food web. Adapting long-term management practices to account for high-frequency changes in algal production will help safeguard inland fish resources.

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