Cyclothialidine is a new DNA gyrase inhibitor isolated from Streptomycesfilipinensis NR0484. Structurally, it belongs to a new class of natural products containing a unique 12-membered lactone ring that is partly integrated into a pentapeptide chain When ATP is present, DNA gyrase catalyzes the introduction of negative supercoils into DNA; in the absence of ATP, it removes negative supercoils, albeit inefficiently. The mammalian topoisomerase, however, can only relax supercoiled DNA. DNA gyrase has proved to be essential for bacterial growth. These factors provide the basis for DNA gyrase inhibitors to exert their antibacterial activities with selective toxicities. DNA gyrase is known to be the target of two classes of antibiotics. One comprises the synthetic quinolones, typified by nalidixic acid and oxolinic acid, which target the A subunit of the enzyme and probably act by interfering with the DNA rejoining step of the gyrasemediated DNA strand-passing reaction (14,27,30). The other class consists of the natural coumarin-type compounds, such as novobiocin and coumermycin Al, that inhibit gyrase probably by competing with ATP for binding to the B subunit of the enzyme (7,8,15,29). Although synthetic quinolones are commercially successful antibacterial agents, there is still room for improvement in their toxicities (33) and activities against resistant strains (6, 26). The natural novobiocin derivatives are also toxic. These situations led us to initiate microbial broth screening for DNA gyrase inhibitors with the aim of identifying new lead compounds. From the screening of natural products for DNA gyrase inhibitors, we discovered a novel DNA gyrase inhibitor, cyclothialidine (Ro 09-1437) (Fig. 1) (1). It was isolated from the fermentation products of Streptomyces * Corresponding author. filipinensis NR0484. Cyclothialidine contains a unique 12-member lactone ring which is partly integrated into a pentapeptide chain. In this report, we describe the biological activity of cyclothialidine as a lead structure for a new class of antibacterial agents.
MATERIALS AND METHODSChemicals. Cyclothialidine (molecular weight, 641; >98% pure) was isolated from the culture broth of S. filipinensis NR0484. Nalidixic acid, oxolinic acid, novobiocin, coumermycin Al, and adriamycin were purchased from Sigma Chemical Company. Ofloxacin (Daiichi), norfloxacin (Kyorin), ciprofloxacin (Bayer), and enoxacin (Dainippon) were >98% pure by high-pressure liquid chromatographic analysis. All other chemicals were at least analytical grade. DNA