The addition of acoustic telemetry to conventional tagging studies can generate direct estimates of mortality and movement rates to inform fisheries management. We applied a combined telemetry and tag-return design to southern flounder (Paralichthys lethostigma), a coastal flatfish that demonstrates limited movements within estuarine habitats coupled with extensive ontogenetic migrations that present unique challenges for estimating mortality rates. The fates of acoustically and conventionally tagged fish were followed during 2014–2016 to estimate annual rates of fishing mortality (F), natural mortality (M), and estuarine emigration (E). Multistate models estimated southern flounder annual F for each of the 3 years at two spatial scales (New River estuary F = 0.49–1.61; North Carolina coast F = 0.36–0.72). Annual rates of emigration were high (E = 1.06–1.67), and direct estimation of this source of loss considerably improved mortality estimates. The model estimated natural mortality as a constant annual rate (M = 0.84), which was similar in magnitude to life-history-based estimates for similar age groups. By accounting for unique behavioral attributes in the study design, the application of multistate tagging models provided robust estimates of mortality and emigration rates for a valuable coastal fishery resource that will inform future efforts to achieve yield and conservation goals.
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