Chlorophyll fluorescence is a non-invasive measurement of photosystem II (PSII) activity and is a commonly used technique in plant physiology. The sensitivity of PSII activity to abiotic and biotic factors has made this a key technique not only for understanding the photosynthetic mechanisms but also as a broader indicator of how plants respond to environmental change. This, along with low cost and ease of collecting data, has resulted in the appearance of a large array of instrument types for measurement and calculated parameters which can be bewildering for the new user. Moreover, its accessibility can lead to misuse and misinterpretation when the underlying photosynthetic processes are not fully appreciated. This review is timely because it sits at a point of renewed interest in chlorophyll fluorescence where fast measurements of photosynthetic performance are now required for crop improvement purposes. Here we help the researcher make choices in terms of protocols using the equipment and expertise available, especially for field measurements. We start with a basic overview of the principles of fluorescence analysis and provide advice on best practice for taking pulse amplitude-modulated measurements. We also discuss a number of emerging techniques for contemporary crop and ecology research, where we see continual development and application of analytical techniques to meet the new challenges that have arisen in recent years. We end the review by briefly discussing the emerging area of monitoring fluorescence, chlorophyll fluorescence imaging, field phenotyping, and remote sensing of crops for yield and biomass enhancement.

The control of gaseous exchange between the leaf and bulk atmosphere by stomata governs CO 2 uptake for photosynthesis and transpiration, determining plant productivity and water use efficiency. The balance between these two processes depends on stomatal responses to environmental and internal cues and the synchrony of stomatal behavior relative to mesophyll demands for CO 2 . Here we examine the rapidity of stomatal responses with attention to their relationship to photosynthetic CO 2 uptake and the consequences for water use. We discuss the influence of anatomical characteristics on the velocity of changes in stomatal conductance and explore the potential for manipulating the physical as well as physiological characteristics of stomatal guard cells in order to accelerate stomatal movements in synchrony with mesophyll CO 2 demand and to improve water use efficiency without substantial cost to photosynthetic carbon fixation. We conclude that manipulating guard cell transport and metabolism is just as, if not more likely to yield useful benefits as manipulations of their physical and anatomical characteristics. Achieving these benefits should be greatly facilitated by quantitative systems analysis that connects directly the molecular properties of the guard cells to their function in the field.In order for plants to function efficiently, they must balance gaseous exchange between inside and outside the leaf to maximize CO 2 uptake for photosynthetic carbon assimilation (A) and to minimize water loss through transpiration. Stomata are the "gatekeepers" responsible for all gaseous diffusion, and they adjust to both internal and external environmental stimuli governing CO 2 uptake and water loss. The pathway for CO 2 uptake from the bulk atmosphere to the site of fixation is determined by a series of diffusional resistances, which start with the layer of air immediately surrounding the leaf (the boundary layer). Stomatal pores provide a major resistance to flux from the atmosphere to the substomatal cavity within the leaf. Further resistance is encountered by CO 2 across the aqueous and lipid boundaries into the mesophyll cell and chloroplasts (mesophyll resistance). Water leaving the leaf largely follows the same pathway in reverse, but without the mesophyll resistance component. Guard cells surround the stomatal pore. They increase or decrease in volume in response to external and internal stimuli, and the resulting changes in guard cell shape adjust stomatal aperture and thereby affect the flux of gases between the leaf internal environment and the bulk atmosphere. Stomatal behavior, therefore, controls the volume of CO 2 entering the intercellular air spaces of the leaf for photosynthesis. It also plays a key role in minimizing the amount of water lost. Transpiration, by virtue of the concentration differences, is an order of magnitude greater than CO 2 uptake, which is an inevitable consequence of free diffusion across this pathway. Although the cumulative area of stomatal pores only represents a small fraction...

Summary Both photosynthesis (A) and stomatal conductance (g s) respond to changing irradiance, yet stomatal responses are an order of magnitude slower than photosynthesis, resulting in noncoordination between A and g s in dynamic light environments.Infrared gas exchange analysis was used to examine the temporal responses and coordination of A and g s to a step increase and decrease in light in a range of different species, and the impact on intrinsic water use efficiency was evaluated.The temporal responses revealed a large range of strategies to save water or maximize photosynthesis in the different species used in this study but also displayed an uncoupling of A and g s in most of the species. The shape of the guard cells influenced the rapidity of response and the overall g s values achieved, with different impacts on A and W i. The rapidity of g s in dumbbell‐shaped guard cells could be attributed to size, whilst in elliptical‐shaped guard cells features other than anatomy were more important for kinetics.Our findings suggest significant variation in the rapidity of stomatal responses amongst species, providing a novel target for improving photosynthesis and water use.

Activity of the Calvin cycle enzyme sedoheptulose-1,7-bisphosphatase (SBPase) was increased by overexpression of an Arabidopsis (Arabidopsis thaliana) cDNA in tobacco (Nicotiana tabacum) plants. In plants with increased SBPase activity, photosynthetic rates were increased, higher levels of Suc and starch accumulated during the photoperiod, and an increase in leaf area and biomass of up to 30% was also evident. Light saturated photosynthesis increased with increasing SBPase activity and analysis of CO 2 response curves revealed that this increase in photosynthesis could be attributed to an increase in ribulose 1,5-bisphosphate regenerative capacity. Seedlings with increased SBPase activity had an increased leaf area at the 4 to 5 leaf stage when compared to wild-type plants, and chlorophyll fluorescence imaging of these young plants revealed a higher photosynthetic capacity at the whole plant level. Measurements of photosynthesis, made under growth conditions integrated over the day, showed that mature plants with increased SBPase activity fixed 6% to 12% more carbon than equivalent wild-type leaves, with the young leaves having the highest rates. In this paper, we have shown that photosynthetic capacity per unit area and plant yield can be increased by overexpressing a single native plant enzyme, SBPase, and that this gives an advantage to the growth of these plants from an early phase of vegetative growth. This work has also shown that it is not necessary to bypass the normal regulatory control of SBPase, exerted by conditions in the stroma, to achieve improvements in carbon fixation.The photosynthetic carbon reduction (Calvin) cycle is the primary pathway for fixation of atmospheric CO 2 . This cycle plays a central role in plant metabolism, providing intermediates not only for starch and Suc biosynthesis, but also for isoprenoid metabolism and shikimic acid biosynthesis (Geiger and Servaites, 1994). Recently, a major focus has been to identify the individual steps that control carbon flux through the Calvin cycle. To address this question, antisense plants have been produced in which the levels of individual enzymes in the cycle have been reduced and the response of photosynthesis in these plants has been measured. This has allowed the contribution that individual enzymes exert over the control of flux through the Calvin cycle to be quantified (for review, see Stitt and Schulze, 1994;Raines, 2003). A number of interesting and surprising results have emerged from these analyses. Firstly, it was shown that for plants grown in moderate light and temperature conditions, more than 50% of wild-type levels of Rubisco could be removed before any significant effect on ambient photosynthesis was observed. However, under conditions of high light, reductions in photosynthesis were proportionate to decreases in Rubisco activity Stitt et al., 1991;Hudson et al., 1992;Krapp et al., 1994;Stitt and Schulze, 1994). Reductions of greater than 50% in the levels of glyceraldehyde-3-P dehydrogenase, Fru-1,6-bisphosphatase (FBPase)...

Contents Summary93I.Introduction93II.Influence of the speed of gs responses on A and Wi93III.Determinants of the rapidity of gs responses95IV.Conclusion97Acknowledgements97References97 Summary Stomatal movements control CO2 uptake for photosynthesis and water loss through transpiration, and therefore play a key role in plant productivity and water use efficiency. The predicted doubling of global water usage by 2030 mean that stomatal behaviour is central to current efforts to increase photosynthesis and crop yields, particularly under conditions of reduced water availability. In the field, slow stomatal responses to dynamic environmental conditions add a temporal dimension to gaseous fluxes between the leaf and atmosphere. Here, we review recent work on the rapidity of stomatal responses and present some of the possible anatomical and biochemical mechanisms that influence the rapidity of stomatal movements.

Previously, it has been shown that Arabidopsis thaliana leaves exposed to high light accumulate hydrogen peroxide (H2O2) in bundle sheath cell (BSC) chloroplasts as part of a retrograde signaling network that induces ASCORBATE PEROXIDASE2 (APX2). Abscisic acid (ABA) signaling has been postulated to be involved in this network. To investigate the proposed role of ABA, a combination of physiological, pharmacological, bioinformatic, and molecular genetic approaches was used. ABA biosynthesis is initiated in vascular parenchyma and activates a signaling network in neighboring BSCs. This signaling network includes the Gα subunit of the heterotrimeric G protein complex, the OPEN STOMATA1 protein kinase, and extracellular H2O2, which together coordinate with a redox-retrograde signal from BSC chloroplasts to activate APX2 expression. High light–responsive genes expressed in other leaf tissues are subject to a coordination of chloroplast retrograde signaling and transcellular signaling activated by ABA synthesized in vascular cells. ABA is necessary for the successful adjustment of the leaf to repeated episodes of high light. This process involves maintenance of photochemical quenching, which is required for dissipation of excess excitation energy.

Phytoplankton primary productivity is most commonly measured by 14 C assimilation although less direct methods, such as O 2 exchange, have also been employed. These methods are invasive, requiring bottle incubation for up to 24 h. As an alternative, Fast Repetition Rate fluorometry (FRRf) has been used, on wide temporal and spatial scales within aquatic systems, to estimate photosystem II (PSII) electron flux per unit volume (JV PSII ), which generally correlates well with photosynthetic O 2 evolution. A major limitation of using FRRf arises from the need to employ an independent method to determine the concentration of functional photosystem II reaction centers ([RCII]); a requirement that has prevented FRR fluorometers being used, as stand-alone instruments, for the estimation of electron transport. Within this study, we have taken a new approach to the analysis of FRRf data, based on a simple hypothesis; that under a given set of environmental conditions, the ratio of rate constants for RCII fluorescence emission and photochemistry falls within a narrow range, for all groups of phytoplankton. We present a simple equation, derived from the established FRRf algorithm, for determining [RCII] from dark FRRf data alone. We also describe an entirely new algorithm for estimating JV PSII , which does not require determination of [RCII] and is valid for a heterogeneous model of connectivity among RCIIs. Empirical supporting evidence is presented. These data are derived from FRR measurements across a diverse range of microalgae, in parallel with independent measurements of [RCII]. Possible sources of error, particularly under nutrient stress conditions, are discussed. *Corresponding author: E-mail: koxborough@chelsea.co.uk AcknowledgmentsWe would like to thank Tania Cresswell-Maynard (University of Essex) for providing many of the cultures used within this study and Kimberley Walrond (University of Manchester) for helpful discussions. Contributions of DJS and RJG were supported by the EU project PRO-TOOL (EU-226880). The contribution of CMM was supported by the Natural Environment Research Council, UK (NE/G009155/1). The authors owe extreme thanks to Hugh MacIntyre (Dalhousie University, Halifax, Canada) and Marie-Hélène Forget (Bedford Institute of Oceanography, Dartmouth, Canada) for their assistance and contributions in facilitating the Mk I FASTtracka data sets evaluated here.

Microbe associated molecular pattern (MAMP) receptors in plants recognize MAMPs and activate basal defences; however a complete understanding of the molecular and physiological mechanisms conferring immunity remains elusive. Pathogens suppress active defence in plants through the combined action of effector proteins. Here we show that the chloroplast is a key component of early immune responses. MAMP perception triggers the rapid, large-scale suppression of nuclear encoded chloroplast-targeted genes (NECGs). Virulent Pseudomonas syringae effectors reprogramme NECG expression in Arabidopsis, target the chloroplast and inhibit photosynthetic CO 2 assimilation through disruption of photosystem II. This activity prevents a chloroplastic reactive oxygen burst. These physiological changes precede bacterial multiplication and coincide with pathogen-induced abscisic acid (ABA) accumulation. MAMP pretreatment protects chloroplasts from effector manipulation, whereas application of ABA or the herbicide DCMU inhibits the MAMP-induced chloroplastic reactive oxygen burst, and enhances growth of a P. syringae hrpA mutant that fails to secrete effectors.