A linkage map of expressed sequence tag (EST)-based markers in radish (Raphanus sativus L.) was constructed using a low-cost and high-efficiency single-nucleotide polymorphism (SNP) genotyping method named multiplex polymerase chain reaction–mixed probe dot-blot analysis developed in this study. Seven hundred and forty-six SNP markers derived from EST sequences of R. sativus were assigned to nine linkage groups with a total length of 806.7 cM. By BLASTN, 726 markers were found to have homologous genes in Arabidopsis thaliana, and 72 syntenic regions, which have great potential for utilizing genomic information of the model species A. thaliana in basic and applied genetics of R. sativus, were identified. By construction and analysis of the genome structures of R. sativus based on the 24 genomic blocks within the Brassicaceae ancestral karyotype, 23 of the 24 genomic blocks were detected in the genome of R. sativus, and half of them were found to be triplicated. Comparison of the genome structure of R. sativus with those of the A, B, and C genomes of Brassica species and that of Sinapis alba L. revealed extensive chromosome homoeology among Brassiceae species, which would facilitate transfer of the genomic information from one Brassiceae species to another.
Recent studies have shown that larval chironomids assimilate 13 C-depleted carbon derived from biogenic methane by feeding on methane-oxidizing bacteria (MOB). The dietary contribution of MOB is known to be maximized in the autumn overturn period or winter in eutrophic dimictic lakes due to the increase of MOB biomass following the supply of oxygenated water, but in polymictic lakes, such seasonal variability has not been revealed. We investigated the seasonal patterns of larval d 13 C and methane concentrations in the sediment of a eutrophic polymictic lake, Izunuma, Japan. Larval d 13 C decreased in late summer and autumn. Methane concentrations above a 6 cm depth peaked in late summer or autumn, while those in the 10-11-and 20-21-cm layers peaked in October. Negative correlations between methane concentrations in the 5-6/10-11-cm layers and larval d 13 C were found. This suggests that an increase in the supply of methane stimulated the activity of MOB in a polymictic lake, where water above the lake bottom rarely became anoxic because of frequent overturn, thus increasing the dietary contribution of MOB to larval chironomids.
The radiocesium interception potential (RIP) of bulk soil (RIP) can reliably be used to predict the magnitude of soil-to-plant radiocesium transfer. There has been some controversy about which soil properties control the RIP, although the RIP is theoretically proportional to the amount of frayed edge sites in micaceous clay minerals. The RIP was determined for 97 paddy soils in three regions (Hama-dori, Naka-dori, and Aizu) in Fukushima Prefecture, Japan, and the relationships between selected physicochemical properties and the RIP were analyzed. The mean (± standard deviation) of the RIP for the 97 soils was 1.67 (±0.87) mol kg, and the range was 0.34 to 5.36 mol kg. Pearson correlation analysis revealed that the RIP positively correlated best ( < 0.01) with the clay fraction K content as a mass fraction of the bulk soil (clay-K) and negatively correlated with the total C content and the phosphate absorption coefficient ( < 0.05). Therefore, clay-K, an indicator of the amount of micaceous clay minerals in a soil, was confirmed as being useful for estimating the magnitude of the RIP for paddy soils in Fukushima. The RIP was invariably low if either the total C content exceeded 6.0% or the phosphate absorption coefficient exceeded 1500 mg kg, suggesting that these parameters could be useful for screening soils with particularly low RIP values.
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