An alternative cluster-continuum approach for the calculation of solvation free energies of ions.
Liquid-jet photoelectron spectroscopy was applied to determine the first acid dissociation constant (p K a ) of aqueous-phase glucose while simultaneously identifying the spectroscopic signature of the respective deprotonation site. Valence spectra from solutions at pH values below and above the first p K a reveal a change in glucose’s lowest ionization energy upon the deprotonation of neutral glucose and the subsequent emergence of its anionic counterpart. Site-specific insights into the solution-pH-dependent molecular structure changes are also shown to be accessible via C 1s photoelectron spectroscopy. The spectra reveal a considerably lower C 1s binding energy of the carbon site associated with the deprotonated hydroxyl group. The occurrence of photoelectron spectral fingerprints of cyclic and linear glucose prior to and upon deprotonation are also discussed. The experimental data are interpreted with the aid of electronic structure calculations. Our findings highlight the potential of liquid-jet photoelectron spectroscopy to act as a site-selective probe of the molecular structures that underpin the acid–base chemistry of polyprotic systems with relevance to environmental chemistry and biochemistry.
Recent techniques of computational electrochemistry can yield redox potentials with accuracy as good as 0.1 V. Yet, many such methods are not universal, easy to use, or computationally efficient. Herein, we provide a systematic benchmarking of a relatively cheap and straightforward computational approach for fairly accurate computations of redox potentials. It is based on a combination of the conductor-like screening model for real solvents (COSMO-RS) and the density functional theory (DFT). The benchmarking is done with databases covering diverse redox systems, including transition-metal aquacomplexes and various organic and inorganic compounds. In addition, we also present our own test set aiming at maximum chemical diversity and maximum range of redox potential values. We assess the performance of the fairly efficient computational protocol combining the COSMO-RS with the BP86 DFT functional. This is done by calibrating it against different high-level state-of-the-art techniques, in particular, polarizable continuum model (PCM) connected to composite G3(MP2,CC)(+) method, domain-based pair natural orbital implementation of coupled cluster theory, or complete basis set CBS-QB3 method. We also elaborate on the absolute reduction potential value of standard hydrogen electrode to be used with COSMO-RS, and we propose the value of approx. 4.4 V. The COSMO-RS/BP86-D3(BJ) combination outperforms other methods on a wide range of redox systems. However, we show that its accuracy is based on a balanced error cancelation and, therefore, it cannot be further systematically improved. As a result, the proposed procedure represents a pragmatic choice for large-scale screening, yet it could be combined with more advanced methods for detailed studies.
Over the past decades, chiroptical spectroscopy has proved its incomparable ability to elucidate the structure and spatial arrangement of chiral molecules. Systematic analysis of biomolecules in the natural environment of biofluids, however, remains challenging. In this study, we used chiroptical spectroscopy to monitor urinary levels of human serum albumin. Not only severe proteinuria but even just a slightly increased urinary excretion of albumin (microalbuminuria) may indicate serious health complications, especially for diabetic individuals. Given the chiral nature of albumin and its typical spectral pattern, it may be easily observable by chiroptical spectroscopy, particularly electronic circular dichroism. The performed chiroptical analysis of urine not only allowed the detection of clinically confirmed microalbuminuria but was also able to reveal this pathological condition in cases beyond the diagnostic capability of common clinical procedures. Thus, our approach suggests that electronic circular dichroism is a useful tool for the fast and reliable qualitative monitoring of microalbuminuria with the potential for a quantitative analysis in the future.
Solvent interactions and specifically hydration are of utmost importance in chemical and biochemical systems. Model systems enable us to unravel the relevance of microscopic details of these interactions. Here, we characterized the electronic structure of the prototypical biomolecular chromophore indole (C8H7N) in aqueous solution and disentangled the specific and non-specific effects of the solvent on indole's electronic structure. The complete photoelectron-emission spectrum of indoleaq in a liquid microjet was measured using 600 eV synchrotron radiation. The first valence photoelectron peak corresponds to the ionization from the HOMO and HOMO−1 orbitals, for which we assigned the binding energies to 7.38 and 7.93 eV. The solvent shifts for these peaks indicate the presence of simultaneous specific and non-specific effects of the aqueous environment. The valence photoemission data were also compared to available data to determine the reorganization energy of aqueous-phase indole associated with its ionization. The core-electron binding energies for nitrogen and carbon demonstrated a distinct interaction of the water solvent with these atoms: a strong N-H • • • OH2 hydrogen bond and an unstructured interaction of the water solvent with the carbon atoms. Augerelectron contributions to the spectra are also reported and discussed. The experimental data were interpreted with the aid of extensive ab initio modeling. The combination of the maximum-overlap method with the non-equilibrium polarizable-continuum model was demonstrated as an efficient and accurate technique for a modeling of both the valence and core peaks in the spectra. The two-hole electron-population analysis is shown to provide a quantitative theoretical description of Auger spectra.
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