No abstract

Reindeer are semi-domesticated ruminants that have adapted to the challenging northern eurasian environment characterized by long winters and marked annual fluctuations in daylight. We explored the genetic makeup behind their unique characteristics by de novo sequencing the genome of a male reindeer and conducted gene family analyses with nine other mammalian species. We performed a population genomics study of 23 additional reindeer representing both domestic and wild populations and several ecotypes from various geographic locations. We assembled 2.66 Gb (N50 scaffold of 5 Mb) of the estimated 2.92 Gb reindeer genome, comprising 27,332 genes. The results from the demographic history analysis suggested marked changes in the effective population size of reindeer during the Pleistocene period. We detected 160 reindeer-specific and expanded genes, of which zinc finger proteins (n = 42) and olfactory receptors (n = 13) were the most abundant. Comparative genome analyses revealed several genes that may have promoted the adaptation of reindeer, such as those involved in recombination and speciation (PRDM9), vitamin D metabolism (TRPV5, TRPV6), retinal development (PRDM1, OPN4B), circadian rhythm (GRIA1), immunity (CXCR1, CXCR2, CXCR4, IFNW1), tolerance to cold-triggered pain (SCN11A) and antler development (SILT2). The majority of these characteristic reindeer genes have been reported for the first time here. Moreover, our population genomics analysis suggested at least two independent reindeer domestication events with genetic lineages originating from different refugial regions after the Last Glacial Maximum. Taken together, our study has provided new insights into the domestication, evolution and adaptation of reindeer and has promoted novel genomic research of reindeer.

Background:The major horse breeds in Finland are the Finnhorse (FH) and the American Standardbred (SB). The foaling rates of the FH have consistently been lower than those of the SB. During the last years, a decreasing trend in foaling rates of both breeds has been observed. The purpose of this study was to describe and compare the structure of these two mare populations for age, reproductive history and mating type. In addition, changes over the years were studied that could explain the decline in foaling rates. Methods:In Finland, the mating statistics and foaling rates per stallion are published yearly by Suomen Hippos, which is the Finnish trotting and breeding association authorized by the EU. The studied material was the electronic breeding data of Suomen Hippos in 1991-2005 which contained 69 180 cases (one mare bred in one year with one stallion), 20 168 mares, 2 230 stallions and 5 397 stud managers. The effect of mare age and type, mating type and changes during the study period were examined separately for FH and SB using SAS 9.1 for descriptive statistical analyses (frequencies, percentages, means, standard deviations and confidence intervals). The outcome of the last mating per season (foal or not) was used in the calculation of the foaling rates. Results:The FH mares were on average one year older and belonged to the older age groups more often than the SB mares. Ageing decreased foaling rates and even more in FH; the foaling rates were the following: young FH 68.6 and SB 72.1%, middle-aged FH 66.1 and SB 71.9%, ageing FH 61.2 and SB 68.4%, and very old FH 52.8 and SB 61.8%. The foaled mares were more frequent in the SB (45%) than in the FH (37%), but the barren and rested mares were more common in the FH. Natural mating was more commonly practiced in the FH as compared to the SB. The foaling rates decreased from 1991 to 2005 in SB from 75.1 to 65.9% and in FH from 66.5 to 60.8%. For both breeds, the proportion of young mares decreased and the proportion of very old mares increased over the years. Similarly, the proportion of foaled mares in both breeds decreased and the proportion of barren mares increased during the study period. In both breeds, insemination (AI) by transported cooled semen increased, diminishing the on-site AI in the SB and the natural mating in the FH. Conclusions:The results of this study suggest that mare age and type and mating type all affect foaling rates and that the structural differences in the mare populations can explain differences in the foaling rates between the horse breeds and between the time periods. BackgroundProfitable horse breeding requires general information about the reproductive traits of horses, which horse breeders can then utilize in decision making. However, most research in equine reproduction has focused on

With the aim of investigating properties of stallion seminal plasma to eventually improve semen-handling techniques, sperm motility and plasma membrane integrity were analysed in different fractions of the ejaculates after storage. Semen was collected using a computer-controlled automated phantom that separates the ejaculates into five successive cups. Samples containing seminal plasma and skim milk extender were compared with samples stored in skim milk extender after the removal of seminal plasma by centrifugation. Fractionated ejaculates were stored cooled for 24 h after dilution with extender (Expt 1) or frozen in liquid nitrogen (Expt 2). In Expt 1, cup 1 was pre-sperm fluid, cups 2 and 3 sperm-rich fractions, and cup 4 sperm-poor fractions. In Expt 2, cups 1 and 2 were sperm-rich fractions, and cups 3 and 4 sperm-poor fractions. One sample (WE) represented the whole ejaculate in both experiments. Motility parameters were determined with a Hamilton-Thorn Motility Analyzer, and plasma membrane integrity was assessed using carboxyfluorescein diacetate and propidium iodide staining and fluorescence microscopy. The removal of seminal plasma lowered motility values, but not plasma membrane integrity, in both experiments. No significant differences between cups were observed after cooled storage. The cups differed significantly in most post-thaw motility parameters, and the sperm-rich fraction showed higher post-thaw motility than the whole ejaculate.

No abstract