We calculate the generating functions of BPS indices using their modular properties in Type II and M-theory compactifications on compact genus one fibered CY 3-folds with singular fibers and additional rational sections or just N-sections, in order to study string dualities in four and five dimensions as well as rigid limits in which gravity decouples. The generating functions are Jacobi-forms of Γ 1 (N) with the complexified fiber volume as modular parameter. The string coupling λ, or the ± parameters in the rigid limit, as well as the masses of charged hypermultiplets and non-Abelian gauge bosons are elliptic parameters. To understand this structure, we show that specific auto-equivalences act on the category of topological B-branes on these geometries and generate an action of Γ 1 (N) on the stringy Kähler moduli space. We argue that these actions can always be expressed in terms of the generic Seidel-Thomas twist with respect to the 6-brane together with shifts of the B-field and are thus monodromies. This implies the elliptic transformation law that is satisfied by the generating functions. We use Higgs transitions in F-theory to extend the ansatz for the modular bootstrap to genus one fibrations with N-sections and boundary conditions fix the all genus generating functions for small base degrees completely. This allows us to study in depth a wide range of new, non-perturbative theories, which are Type II theory duals to the CHL Z N orbifolds of the heterotic string on K3 × T 2. In particular, we compare the BPS degeneracies in the large base limit to the perturbative heterotic one-loop amplitude with R 2 + F 2g−2 + insertions for many new Type II geometries. In the rigid limit we can refine the ansatz and obtain the elliptic genus of superconformal theories in 5d.

This work considers aspects of almost holomorphic and meromorphic Siegel modular forms from the perspective of physics and mathematics. The first part is concerned with (refined) topological string theory and the direct integration of the holomorphic anomaly equations.Here, a central object to compute higher genus amplitudes, which serve as the generating func-

We discuss the period geometry and the topological string amplitudes on elliptically fibered Calabi-Yau fourfolds in toric ambient spaces. In particular, we describe a general procedure to fix integral periods. Using some elementary facts from homological mirror symmetry we then obtain Bridgelands involution and its monodromy action on the integral basis for non-singular elliptically fibered fourfolds. The full monodromy group contains a subgroup that acts as PSL(2,Z) on the Kähler modulus of the fiber and we analyze the consequences of this modularity for the genus zero and genus one amplitudes as well as the associated geometric invariants. We find holomorphic anomaly equations for the amplitudes, reflecting precisely the failure of exact PSL(2,Z) invariance that relates them to quasi-modular forms. Finally we use the integral basis of periods to study the horizontal flux superpotential and the leading order Kähler potential for the moduli fields in F-theory compactifications globally on the complex structure moduli space. For a particular example we verify attractor behaviour at the generic conifold given an aligned choice of flux which we expect to be universal. Furthermore we analyze the superpotential at the orbifold points but find no stable vacua.

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We give further evidence that genus-one fibers with multi-sections are mirror dual to fibers with Mordell-Weil torsion. In the physics of F-theory compactifications this implies a relation between models with a non-simply connected gauge group and those with discrete symmetries. We provide a combinatorial explanation of this phenomenon for toric hypersurfaces. In particular this leads to a criterion to deduce Mordell-Weil torsion directly from the polytope. For all 3134 complete intersection genus-one curves in threedimensional toric ambient spaces we confirm the conjecture by explicit calculation. We comment on several new features of these models: the Weierstrass forms of many models can be identified by relabeling the coefficient sections. This reduces the number of models to 1024 inequivalent ones. We give an example of a fiber which contains only non-toric sections one of which becomes toric when the fiber is realized in a different ambient space. Similarly a singularity in codimension one can have a toric resolution in one representation while it is non-toric in another. Finally we give a list of 24 inequivalent genus-one fibers that simultaneously exhibit multi-sections and Mordell-Weil torsion in the Jacobian. We discuss a self-mirror example from this list in detail.

In this note we describe a method to calculate the action of a particular Fourier-Mukai transformation on a basis of brane charges on elliptically fibered Calabi-Yau threefolds with and without a section. The Fourier-Mukai kernel is the ideal sheaf of the relative diagonal and for fibrations that admit a section this is essentially the Poincar sheaf. We find that in this case it induces an action of the modular group on the charges of 2-branes.

We present a novel technique to obtain base independent expressions for the matter loci of fibrations of complete intersection Calabi-Yau onefolds in toric ambient spaces. These can be used to systematically construct elliptically and genus one fibered Calabi-Yau d-folds that lead to desired gauge groups and spectra in F-theory. The technique, which we refer to as GV-spectroscopy, is based on the calculation of fiber Gopakumar-Vafa invariants using the Batyrev-Borisov construction of mirror pairs and application of the so-called Frobenius method to the data of a parametrized auxiliary polytope. In particular for fibers that generically lead to multiple sections, only multi-sections or that are complete intersections in higher codimension, our technique is vastly more efficient than classical approaches. As an application we study two Higgs chains of six-dimensional supergravities that are engineered by fibrations of codimension two complete intersection fibers. Both chains end on a vacuum with G = ℤ4 that is engineered by fibrations of bi-quadrics in ℙ3. We use the detailed knowledge of the structure of the reducible fibers that we obtain from GV-spectroscopy to comment on the corresponding Tate-Shafarevich group. We also show that for all fibers the six-dimensional supergravity anomalies including the discrete anomalies generically cancel.

We show that the stringy Kähler moduli space of a generic genus one curve of degree N, for N ≤ 5, is the Γ1(N) modular curve X1(N). This implies a correspondence between the cusps of the modular curves and certain large volume limits in the stringy Kähler moduli spaces of genus one fibered Calabi-Yau manifolds with N-sections. Using Higgs transitions in M-theory and F-theory as well as modular properties of the topological string partition function, we identify these large volume limits with elements of the Tate-Shafarevich group of the genus one fibration. Singular elements appear in the form of non-commutative resolutions with a torsional B-field at the singularity. The topological string amplitudes that arise at the various large volume limits are related by modular transformations. In particular, we find that the topological string partition function of a smooth genus one fibered Calabi-Yau threefold is transformed into that of a non-commutative resolution of the Jacobian by a Fricke involution. In the case of Calabi-Yau threefolds, we propose an expansion of the partition functions of a singular fibration and its non-commutative resolutions in terms of Gopakumar-Vafa invariants that are associated to BPS states with discrete charges. For genus one fibrations with 5-sections, this provides an enumerative interpretation for the partition functions that arise at certain irrational points of maximally unipotent monodromy.