Understanding the effectiveness and potential mechanism of action of agricultural biological products under different soil profiles and crops will allow more precise product recommendations based on local conditions and will ultimately result in increased crop yield. This study aimed to use bulk and rhizosphere soil's microbial composition and structure to evaluate the effect of a Bacillus amyloliquefaciens strain QST713 inoculant on potatoes, and to explore its relationship with crop yield. We implemented NGS and bioinformatics approaches to assess the bacterial and fungal biodiversity in 185 soil samples, distributed over four different time points -from planting to harvest- from three different geographical regions in the United States. In addition to variety, phenological stage of the potato plant and geography being important factors defining the microbiome composition and structure, the microbial inoculant applied as a treatment also had a significant effect. However, treatment preserved the native communities without causing a detectable long-lasting effect on the alpha- and beta-diversity patterns after harvest. Specific taxonomic groups, and most interestingly the structure of the fungal and bacterial communities (measured using co-occurrence and co-exclusion networks), changed after inoculation. Additionally, using information about the application of the microbial inoculant and considering microbiome composition and structure data we were able to train a Random Forest model to estimate if a bulk or rhizosphere soil sample came from a low or high yield block with relatively high accuracy, concluding that the structure of fungal communities is a better estimator of potato yield than the structure of bacterial communities.
A new species of Amomum Roxb. from Western Ghats of Kerala is illustrated and described. Amomum nilgiricum VP.Thomas & M.Sabu, sp. nov. shows similarity with Amomum masticatorium Thwaites in having long drying ligule with an acuminate apex, pubescent anther and echinate capsules, but differs in clump forming habit with non-stoloniferous rhizomes, tomentose lamina beneath, long corolla tube, obovate to rhomboid labellum with clefted apex and without any colour design, emarginate anther crest and reduced staminodes. Detailed description, illustration, photographs, conservation status, and distributional details are provided.
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