Fusarium culmorum and F. graminearum Groups 1 and 2 cause seedling blight, crown rot, foot rot and head blight in wheat and rye that may affect grain yield and quality for baking and feeding. This review starts with an analysis of Fusarium populations with regard to their genetic variation for aggressiveness, mycotoxin production, and isolate-by-host genotype interaction. To assess resistance in the different host growth stages, quantitative inoculation and disease assessment techniques are necessary. Based on estimated population parameters, breeding strategies are reviewed to improve Fusarium resistance in wheat and rye. Epidemiological and toxicological aspects of Fusarium resistance that are important for resistance breeding are discussed.F. culmorum and F. graminearum display large genetic variation for aggressiveness in isolate collections and in naturally occurring populations. The production of mycotoxins, especially deoxynivalenol and its derivatives, is a common trait in these populations. Significant isolate-by-host genotype interactions were not found across environments in wheat and rye.Artificial infections in the field are indispensable for improving Fusarium crown rot, foot rot and head blight resistance in wheat and rye. For a reliable disease assessment of large populations, disease severity ratings were found to be the most convenient. The differentiation of host resistance is greatly influenced by an array of nongenetic factors (macro-environment, microclimate, host growth stage, host organ) that show significant interactions with host genotype. Selection for environmentally stable resistance has to be performed in several environments under a maximum array of different infection levels. Selection in early growth stages or on one plant organ does not in most cases allow prediction of resistance in adult-plant stages or another plant organ.Significant genetic variation for resistance exists for all Fusariumincited diseases in breeding populations of wheat and rye. The pathosystems studied displayed a prevalence of additive gene action with no consistent specific combining abihty effects and thus rapid progress can be expected from recurrent selection. In wheat, intensive testing of parental genotypes allows good prediction of the mean head blight resistance after crossing. Subsequent selection during selfing generations enables the use of transgression towards resistance. In hybrid breeding of winter rye, the close correlation between foot rot resistance of inbred lines and their GCA effects imphes that selection based on the lines per se should be highly effective. This is not valid for F. culmorum head blight of winter rye caused by a greater susceptibihty of the inbred lines compared to their crosses.For both foot rot and head blight resistance, a high correlation between the resistance to F. graminearum and F. culmorum was found in wheat and rye. Mycotoxin accumulation occurs to a great extent in naturally and artificially infected plant stands. The correlation between resistance t...

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A susceptible synthetic winter rye population was inoculated with 42 isolates of Fusarium culmorum, originating from nine European countries and Australia, at two field locations in Germany. Significant (P = 0.01) genetic variation in aggressiveness of isolates of F. culmorum was observed across both field locations. Field samples were used to determine deoxynivalenol (DON), nivalenol (NIV), and ergosterol (ERG) contents. The 42 isolates also were incubated on rye grain in vitro, and DON and NIV contents were analyzed. Thirty-four isolates produced DON, and seven isolates produced NIV at both field locations and in vitro. Mean DON contents ranged from 0.5 to 64.6 mg/kg in grain from field trials and from 0.3 to 376.3 mg/kg in grain incubated in vitro; mean NIV contents ranged from 17.6 to 30.4 mg/kg in grain from field trials and from 0.8 to 381.0 mg/kg in grain incubated in vitro. No correlation was found between the DON content of field-grown grain and grain incubated in vitro. NIV-producing isolates originated from the Netherlands, Germany, Italy, and Australia. More aggressive isolates produced higher mean DON contents in grain in field trials (r = 0.69; P = 0.01). However, DON production rate per unit of fungal biomass, estimated as the DON/ERG ratio at harvest, was not correlated with aggressiveness. Toxin production seemed to be a common feature in F. culmorum. In vitro assays reliably distinguished DON- and NIV-producing types of F. culmorum; however, these assays could not predict production of DON by these isolates in the field.

Gibberella zeae is the major fungal pathogen of Fusarium head blight of wheat and produces several mycotoxins that are harmful to humans and domesticated animals. We identified loci associated with pathogenicity and aggressiveness on an amplified fragment length polymorphism based genetic map of G. zeae in a cross between a lineage 6 nivalenol producer from Japan and a lineage 7 deoxynivalenol producer from Kansas. Ninety-nine progeny and the parents were tested in the greenhouse for 2 years. Progeny segregated qualitatively (61:38) for pathogenicity:nonpathogenicity, respectively. The trait maps to linkage group IV, which is adjacent to loci that affect colony pigmentation, perithecium production, and trichothecene toxin amount. Among the 61 pathogenic progeny, the amount of disease induced (aggressiveness) varied quantitatively. Two reproducible quantitative trait loci (QTL) for aggressiveness were detected on linkage group I using simple interval analysis. A QTL linked to the TRI5 locus (trichodiene synthase in the trichothecene pathway gene cluster) explained 51% of the variation observed, and a second QTL that was 50 centimorgans away explained 29% of the phenotypic variation. TRI5 is tightly linked to the locus controlling trichothecene toxin type. The two QTLs, however, were likely part of the same QTL using composite interval analysis. Progeny that produced deoxynivalenol were, on average, approximately twice as aggressive as those that produced nivalenol. No transgressive segregation for aggressiveness was detected. The rather simple inheritance of both traits in this interlineage cross suggests that relatively few loci for pathogenicity or aggressiveness differ between lineage 6 and 7.

Key message Hyperspectral and genomic data are effective predictors of biomass yield in winter rye. Variable selection procedures can improve the informativeness of reflectance data. Abstract Integrating cutting-edge technologies is imperative to sustainably breed crops for a growing global population. To predict dry matter yield (DMY) in winter rye (Secale cereale L.), we tested single-kernel models based on genomic (GBLUP) and hyperspectral reflectance-derived (HBLUP) relationship matrices, a multi-kernel model combining both matrices and a bivariate model fitted with plant height as a secondary trait. In total, 274 elite rye lines were genotyped using a 10 k-SNP array and phenotyped as testcrosses for DMY and plant height at four locations in Germany in two years (eight environments). Spectral data consisted of 400 discrete narrow bands ranging between 410 and 993 nm collected by an unmanned aerial vehicle (UAV) on two dates on each environment. To reduce data dimensionality, variable selection of bands was performed, resulting in the least absolute shrinkage and selection operator (Lasso) as the best method in terms of predictive abilities. The mean heritability of reflectance data was moderate ($$h^{2}$$ h 2  = 0.72) and highly variable across the spectrum. Correlations between DMY and single bands were generally significant (p < 0.05) but low (≤ 0.29). Across environments and training set (TRN) sizes, the bivariate model showed the highest prediction abilities (0.56–0.75), followed by the multi-kernel (0.45–0.71) and single-kernel (0.33–0.61) models. With reduced TRN, HBLUP performed better than GBLUP. The HBLUP model fitted with a set of selected bands was preferred. Within and across environments, prediction abilities increased with larger TRN. Our results suggest that in the era of digital breeding, the integration of high-throughput phenotyping and genomic selection is a promising strategy to achieve superior selection gains in hybrid rye.

Wheat productivity is threatened by global climate change. In several parts of NW Europe it will get warmer and dryer during the main crop growing period. The resulting likely lower realized on-farm crop yields must be kept by breeding for resistance against already existing and emerging diseases among other measures. Multi-disease resistance will get especially crucial. In this review, we focus on disease resistance breeding approaches in wheat, especially related to rust diseases and Fusarium head blight, because simulation studies of potential future disease risk have shown that these diseases will be increasingly relevant in the future. The long-term changes in disease occurrence must inevitably lead to adjustments of future resistance breeding strategies, whereby stability and durability of disease resistance under heat and water stress will be important in the future. In general, it would be important to focus on non-temperature sensitive resistance genes/QTLs. To conclude, research on the effects of heat and drought stress on disease resistance reactions must be given special attention in the future.

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Fusarium head blight (FHB), caused by Fusarium graminearum Schw. [teleomorph: Gibberella zeae (Schw.) Petch] and Fusarium culmorum (W.G. Sm.) Sacc., is a devastating disease in cereals, resulting in yield loss and contamination of harvested grains with mycotoxins, mainly deoxynivalenol (DON) and 3‐acetyl DON (3‐ADON). This study was undertaken to evaluate the possibility of selecting to reduced DON content and FHB resistance early in a breeding program. We estimated the genetic variance among F3 lines in winter rye (Secale cereale L.) and winter wheat (Triticum aestivum L.) and the association between the two traits. In field experiments, four rye and one wheat populations with a total of 218 and 77 progenies, respectively, together with their parental lines were inoculated in four location–year combinations (environments) with an isolate of F. culmorum that produced high levels of DON. Grain DON and 3‐ADON contents were determined by an enzyme immunoassay and head blight severity was assessed. Additionally, a total of 166 rye samples were analyzed by gas chromatography with mass spectrometry (GC‐MS). The two methods were highly correlated (0.9). Mean DON contents ranged from 20 to 129 mg kg−1, and mean disease severity from 3.8 to 6.8 on the 1‐to‐9 scale. The parental means generally resembled the means of their respective F3 progenies. Significant (P = 0.01) genotypic variance was detected, but genotype × environment interaction was also high (P = 0.01) for the two traits. Grain DON content, however, showed lower heritabilities than head blight rating, especially in rye. Coefficients of phenotypic correlation between FHB severity and DON content, therefore, were only in the medium range for rye (0.3–0.7) and higher for wheat (0.8). Genotypic correlation coefficients generally showed a tight association in both rye and wheat (0.8–0.9). Transgressive segregants for higher DON content were found in three rye populations and for higher FHB resistance in one rye population. Selection for lower grain DON content and FHB resistance can be effectively started by plant breeders as early as in the F3 generation. Lines with low DON content can be indirectly achieved by selecting for reduced head blight severity across environments.