The preservation of natural environments guarantees the conservation of biodiversity and ecosystem processes. Biomonitoring programs in preserved sites can be carried out using molecular biomarkers, which reflect possible stresses that exist in the monitored location. The metallothionein (MT) proteins and isoenzyme Cytochrome P4501A (CYP4501A) are among the most used biomarkers and reflect the detoxification of metal and organic xenobiotics, respectively. This study aimed to assess the performance of these biomarkers in natural aquatic environments using a meta-analytic approach. The data search was conducted in ISI Web of Science™, considering papers published until August 2016. Studies included in this research needed to compare reference or control sites and sites under stress and be conducted in situ. In general, both biomarkers were useful when comparing control sites with sites under stress. Moreover, when the data were categorized into groups of organisms, mainly bivalves and fishes, there were differences between the groups and between the monitored environments, marine or freshwater. The use of these biomarkers in fish is suitable for freshwater environments, and bivalves are suitable for marine environments. We concluded that the concomitant use of vertebrate and invertebrate bioindicators is useful to develop an effective biomonitoring program and to avoid biases due the physiology of the selected bioindicator.
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