No abstract

Underwater visual surveys of coral reefs are the primary method managers use to monitor coral health. However, these surveys are limited to visual signs, such as bleaching and tissue loss lesions, which occur only after significant stress has accumulated. More holistic characterization of coral health can allow for better monitoring of reef changes across natural environmental gradients, in response to anthropogenic stress and after disturbance events (e.g. disease outbreaks, mass bleaching, dredging, run‐off events). Various methods exist to evaluate the health of the coral holobiont that do not depend on visual signs, including histological assessment, microbiome dysbiosis and metabolic profiles, yet these tools are rarely deployed concurrently. We present a clear, readily deployable protocol for sampling and preserving coral fragments, including (a) extraction of coral metabolites for analysis, (b) preservation of microbiome DNA for sequencing and (c) preservation of coral tissues for histopathology. Combined with visual surveys, these methods provide an unparalleled, holistic characterization of coral health. We provide a field‐tested, optimized protocol for conducting coral sampling. This protocol guides the user through concurrent assessments of coral tissue structure and the holobiont microbiome and metabolome, and directs the user to useful resources for downstream data analysis. This protocol facilitates quantitative characterization of coral health beyond visual surveys alone, which is a valuable step forward in reef research and management and will improve our ability to describe, model and mediate impacts to coral reefs.

Coral reefs are amongst the most biodiverse ecosystems on earth, and while stony corals create the foundational complexity of these ecosystems, octocorals and anemones contribute significantly to their biodiversity and function. Like stony corals, many octocorals contain Symbiodiniaceae endosymbionts and can bleach when temperatures exceed the species’ upper thermal limit. Here, we report octocoral bleaching susceptibility and resistance within the subtropical Lord Howe Island coral reef ecosystem during and after marine heatwaves in 2019. Octocoral and anemone surveys were conducted at multiple reef locations within the Lord Howe Island lagoon during, immediately after, and 7 months after the heatwaves. One octocoral species, Cladiella sp. 1, experienced bleaching and mortality, with some bleached colonies detaching from the reef structure during the heatwave (presumed dead). Those that remained attached to the benthos survived the event and recovered endosymbionts within 7 months of bleaching. Cladiella sp. 1 Symbiodiniaceae density (in cells per µg protein), chlorophyll a and c2 per µg protein, and photosynthetic efficiency were significantly lower in bleached colonies compared to unbleached colonies, while chlorophyll a and c2 per symbiont were higher. Interestingly, no other symbiotic octocoral species of the Lord Howe Island lagoonal reef bleached. Unbleached Xenia cf crassa colonies had higher Symbiodiniaceae and chlorophyll densities during the marine heatwave compared to other monitoring intervals, while Cladiella sp. 2 densities did not change substantially through time. Previous work on octocoral bleaching has focused primarily on gorgonian octocorals, while this study provides insight into bleaching variability in other octocoral groups. The study also provides further evidence that octocorals may be generally more resistant to bleaching than stony corals in many, but not all, reef ecosystems. Responses to marine heating events vary and should be assessed on a species by species basis.

Oceanic thermal anomalies are increasing in both frequency and strength, causing detrimental impacts to coral reef communities. Water temperatures beyond the corals optimum threshold causeing coral bleaching and mass mortality, impacting our global coral reef ecosystems, including marginal high-latitude reefs. Coral bleaching and mortality were observed at the southernmost coral reef, Lord Howe Island Marine Park, during the summer of 2019, coinciding with anomalously high sea surface temperatures across the reef system from January-April. Here we document the extent of coral impacts within the Lord Howe Island lagoonal reef and the recovery from bleaching eight-months later. Significant differences in bleaching prevalence were observed across the lagoonal coral reef, ranging from 16 to 83% across offshore and inshore reef regions and with variable onset timing. Coral mortality of up to 40% was recorded in the reef’s most severely impacted near-shore area. The four most dominant species, Stylophora pistillata, Pocillopora damicornis, Porites spp. and Seriatopora hystrix, were the most susceptible to bleaching, with all coral colonies found either bleached or dead at the most affected inshore site during and following peak heat stress. Interestingly, during the eight-months following bleaching, there was no evidence of bleaching recovery (i.e., re-establishment of symbiosis) at the offshore lagoonal site. However, there was a significant increase in the abundance of healthy coral colonies at the inshore site, suggesting the recovery of the surviving bleached corals at this site. Importantly, we found no evidence for bleaching or mortality in the Acropora spp. and minimal bleaching and no mortality in Isopora cuneata during the study period, typically highly susceptible species. Given the isolation of high-latitude reefs such as Lord Howe Island, our results highlight the importance of understanding the impacts of bleaching, mortality and bleaching recovery on coral population structure and resilience of high-latitude coral reefs.