Background Surface populations of A. mexicanus, living in rivers like their common ancestors, school, while several, independent derived cave populations of the same species have lost schooling behavior. Results We quantify schooling behavior in individual A. mexicanus and identify quantitative trait loci (QTL) for this trait. We find that the evolutionary modulation of schooling has both vision-dependent and independent components. We also quantify differences in the lateral line and vision between cavefish and surface fish and relate these differences to the evolutionary loss of schooling behavior. We provide evidence that a monoamine may have played a role in the evolution of schooling behavior. Conclusions We find that vision is essential for schooling tendency in A. mexicanus, while the lateral line has a small effect on this behavior. Schooling behavior in A. mexicanus has evolved both through changes in sensory systems and through changes in genetic loci that likely act downstream of sensory inputs.
Collective cell contractions that generate global tissue deformations are a signature feature of animal movement and morphogenesis. However, the origin of collective contractility in animals remains unclear. While surveying the Caribbean island of Curaçao for choanoflagellates, the closest living relatives of animals, we isolated a previously undescribed species (here named Choanoeca flexa sp. nov.) that forms multicellular cup-shaped colonies. The colonies rapidly invert their curvature in response to changing light levels, which they detect through a rhodopsin–cyclic guanosine monophosphate pathway. Inversion requires actomyosin-mediated apical contractility and allows alternation between feeding and swimming behavior. C. flexa thus rapidly converts sensory inputs directly into multicellular contractions. These findings may inform reconstructions of hypothesized animal ancestors that existed before the evolution of specialized sensory and contractile cells.
When an organism colonizes a new environment, it needs to adapt both morphologically and behaviorally to survive and thrive. Although recent progress has been made in understanding the genetic architecture underlying morphological evolution, behavioral evolution is poorly understood. Here, we use the Mexican cavefish, Astyanax mexicanus, to study the genetic basis for convergent evolution of feeding posture. When river-dwelling surface fish became entrapped in the caves, they were confronted with dramatic changes in the availability and type of food source and in their ability to perceive it. In this setting, multiple independent populations of cavefish exhibit an altered feeding posture compared with their ancestral surface forms. We determined that this behavioral change in feeding posture is not due to changes in cranial facial morphology, body depth, or to take advantage of the expansion in the number of taste buds. Quantitative genetic analysis demonstrates that two different cave populations have evolved similar feeding postures through a small number of genetic changes, some of which appear to be distinct. This work indicates that independently evolved populations of cavefish can evolve the same behavioral traits to adapt to similar environmental challenges by modifying different sets of genes.T he colonization of caves is an extreme example of a species entering a new environment. Unique attributes of caves relative to the surface environment include darkness, high humidity, relatively constant temperature, absence of predators, and scarcity of food. Under these circumstances, many species of cave animals have evolved a suite of similar traits, including constructive traits such as heightened sensory systems and regressive traits such as loss of pigmentation and reduction in eye morphology (1). To study the evolution of cave-specific traits, we have focused on Astyanax mexicanus, the Mexican cavefish. A. mexicanus exists in two forms, a cave-dwelling form and a river-dwelling surface form. Importantly, these forms are still interfertile (2), allowing one to take a genetic approach using quantitative trait loci (QTL) analysis for the mapping of cave traits. Furthermore, there are multiple, independently evolved cave populations (3-7) that in many cases have evolved similar traits, allowing for the study of convergent evolution.Populations of cave organisms have often been the subjects of studies on convergence. For example, loss of pigmentation evolved via disruptions in the first step of the melanin synthesis pathway in multiple species of cave organisms (8). Similarly, a decrease in the levels of melanin synthesis arose in multiple cave populations of A. mexicanus through different mutations in the same genes (9, 10). In contrast, crosses between multiple cave populations of A. mexicanus result in embryonic hybrid fish with larger, functional eyes, indicating that evolution of this trait is controlled by different genetic loci in different cave populations (2, 11).Among the most intriguing and least und...
A central goal of evolutionary biology is to understand the molecular mechanisms underlying phenotypic adaptation. While the contribution of protein-coding and cis-regulatory mutations to adaptive traits has been well documented, additional sources of variation - such as the production of alternative RNA transcripts from a single gene, or isoforms - have been understudied. Here, we focus on the pigmentation gene Agouti, known to express multiple alternative transcripts, to investigate the role of isoform usage in the evolution of cryptic colour phenotypes in deer mice (genus Peromyscus). We first characterize the Agouti isoforms expressed in the Peromyscus skin and find two novel isoforms not previously identified in Mus. Next, we show that a locally adapted light-coloured population of P. maniculatus living on the Nebraska Sand Hills shows an upregulation of a single Agouti isoform, termed 1C, compared with their ancestral dark-coloured conspecifics. Using in vitro assays, we show that this preference for isoform 1C may be driven by isoform-specific differences in translation. In addition, using an admixed population of wild-caught mice, we find that variation in overall Agouti expression maps to a region near exon 1C, which also has patterns of nucleotide variation consistent with strong positive selection. Finally, we show that the independent evolution of cryptic light pigmentation in a different species, P. polionotus, has been driven by a preference for the same Agouti isoform. Together, these findings present an example of the role of alternative transcript processing in adaptation and demonstrate molecular convergence at the level of isoform regulation.
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