The lack of morphological variation in many freshwater invertebrates over vast distances has been cited as evidence for their frequent, long-distance dispersal. This scenario implies that vicariance will be an insignificant determinant of species distributions or diversity. We carried out a phylogeographic and population genetics study of one widespread crustacean group, the North American Daphnia laevis complex. Allozyme and sequence variation of two mtDNA genes (12S and 16S rRNA) clearly indicates the existence of five morphologically cryptic, largely allopatric groups (Daphnia dubia, D. laevis laevis, D. laevis gessneri, D. magniceps magniceps, and D. magniceps pacifica ssp. n.). Within each of these groups, there is weak or no genetic differentiation over large geographic areas suggesting their recent long-distance dispersal. The present-day distributions and phylogeography of the regional groups suggests the occurrence of both deep and shallow vicariance events. Although divergence times from mtDNA sequences do indicate both deep and shallow divergences, these estimates are incongruent with their proposed vicariance times. The results show that even within closely related freshwater invertebrates, a complex biogeography exists, whose analysis is made difficult by long-distance dispersal, cryptic endemism, and pseudocongruence.

Efforts to deduce the evolutionary significance of sexual reproduction from the taxonomic and ecological distributions of asexuals rely on the presumption that reversions of asexual taxa to sexual reproduction are rare. There is growing evidence, however, that reversions may be likely as long as asexuals are diploid, and some sexual populations persist. However, few systems have been studied in sufficient detail to provide insight into the nature of interactions between the sexual and asexual components of a single taxon. The cladoceran crustaceans Daphnia pulex and D. puilcaria both show variation in breeding system with some populations reproducing by cyclic and others by obligate parthenogenesis. The present study used allozymic analysis to characterize the breeding systems of both species across Canada. Although F1 hybrids were prevalent between the species and invariably reproduced by obligate parthenogenesis, each parent species showed regional variation in its breeding system. D. pulex reproduces by obligate parthenogenesis in eastern Canada but switches to cyclic parthenogenesis in the west with an abrupt transition coincident with the forest/prairie ecotone. D. pulicaria shows a divergent pattern, with populations on the priaries reproducing by obligate parthenogenesis, while those in eastern Canada and the far west are cyclic parthenogens. The results make clear that breeding systems in both taxa tend to be uniform over large areas. The discordance in breeding system employed by each species at specific sites suggests that the patterns of breeding system variation are not linked to environmental factors, but are instead a consequence of the interplay between historical factors, such as dispersion patterns from glacial ref ugia and the sites of origin of mutations promoting the transition to asexuality.

The landscape of the Pilbara region of Western Australia has been relatively unchanged for 100 million years. The ancient river systems of this region might be expected to be sources of isolation and divergence for aquatic species. Hence, the occurrence of widespread groundwater taxa in this landscape offers the opportunity to examine associations between genetic diversity and drainage patterns. Pilbarus and Chydaekata are two widespread genera of subterranean amphipods endemic to the Pilbara, each occupying multiple tributaries. We used molecular data to examine the roles of drainage patterns in structuring genetic diversity. Gene flow within a tributary may be facilitated by the occasional occurrence of these amphipods in springs, which results in their downstream dispersal during episodic flooding. However, tributary boundaries may form hydrological barriers to gene flow, resulting in localised isolation of populations and divergence. Samples of both genera, collected throughout three river basins, were examined for sequence divergence in the cytochrome c oxidase I mitochondrial gene. There was no evidence of contemporary gene flow among populations of either genus, and each tributary contained highly divergent lineages, which were not associated with similar morphological differentiation. This suggests cryptic speciation has occurred, and similar phylogenetic signals in both taxa imply similar evolutionary histories. Surface populations may have been driven into subterranean refugia by the cessation of flow in the rivers, associated with Tertiary climate change, while morphological evolution may have been constrained by stabilising selection. The lack of congruence between molecular diversity and morphology raises important practical issues for conservation.

Studies on the biogeographical patterning of reproductive systems promise to extend understanding of the factors which modulate breeding system transitions. Two closely allied cladoceran crustaceans, Daphnia pulex and D. pulicaria, show varied modes of reproduction, with populations reproducing by either cyclic or obligate parthenogenesis. Prior studies have provided a detailed understanding of their breeding system diversity in the polar and cold temperate regions of North America. The present investigation extends this analysis, characterizing breeding systems and clonal diversity at sites throughout the United States and Mexico. Genotypic diversity in these southern areas was high, but only diploids were detected, indicating that polyploids are restricted to the north. F(1) hybrids and their two parental species were present in most areas, although their frequencies varied geographically. Hybrids invariably reproduced by obligate asexuality, but both parental taxa showed regional shifts in their breeding system. The complexity of these latter patterns suggests that they reflect the interplay of historical factors and selection.