The 2-oxoglutarate (2OG)-and Fe 2 þ -dependent dioxygenase AlkB couples the demethylation of modified DNA to the decarboxylation of 2OG. Extensive crystallographic analyses have shown no evidence of significant structural differences between complexes binding either 2OG or succinate. By using nuclear magnetic resonance spectroscopy, we have shown that the AlkB-succinate and AlkB-2OG complexes have significantly different dynamic properties in solution. 2OG makes the necessary contacts between the metal site and the large b-sheet to maintain a fully folded conformation. Oxidative decarboxylation of 2OG to succinate leads to weakening of a main contact with the large b-sheet, resulting in an enhanced dynamic state. These conformational fluctuations allow for the replacement of succinate in the central core of the protein and probably contribute to the effective release of unmethylated DNA. We also propose that the inherent dynamics of the co-product complex and the subsequent increased molecular ordering of the co-substrate complex have a role in DNA damage recognition.

Immediately prior to invasion Toxoplasma gondii tachyzoites release a large number of micronemal proteins (TgMICs) that participate in host cell attachment and penetration. The TgMIC4-MIC1-MIC6 complex was the first to be identified in T. gondii and has been recently shown to be critical in invasion. This study establishes that the N-terminal throm-bospondin type I repeat-like domains (TSR1-like) from TgMIC1 function as an independent adhesin as well as promoting association with TgMIC4. Using the newly solved three-dimensional structure of the C-terminal domain of TgMIC1 we have identified a novel Galectin-like fold that does not possess carbohydrate binding properties and redefines the architecture of TgMIC1. Instead, the TgMIC1 Galectin-like domain interacts and stabilizes TgMIC6, which provides the basis for a highly specific quality control mechanism for successful exit from the early secretory compartments and for subsequent trafficking of the complex to the micronemes.Toxoplasma gondii is a protozoan parasite of the phylum Apicomplexa, which infects virtually all warm-blooded animals and invades almost any cell type. Host cell invasion by this obligate intracellular parasite is an active process initiated by the formation of a tight association/junction with the host cell plasma membrane and leading to the creation of a parasitophorous vacuole. Contact with the host cell results in an increase in parasite intracellular calcium ions, which trigger apical organelles called micronemes to discharge their contents (1). Several micronemal proteins act as ligands for host cell receptors (2), while TgMIC2 and other transmembrane proteins establish a connection with the parasite actinomyosin system via their cytoplasmic tail (3), thus providing the motive force for penetration (4). It is becoming increasingly apparent that many microneme proteins are found in stable adhesive complexes, which are formed in the endoplasmic reticulum, and normally comprise an escorter protein, which is responsible for correct micronemal targeting, and one or more soluble effector proteins. The first such complex to be discovered in T. gondii was TgMIC4-MIC1-MIC6, in which TgMIC6 fulfils the role of the escorter protein, whereas TgMIC1 and TgMIC4 function as adhesins (5). Although TgMIC4-MIC1-MIC6 and the recently identified micronemal complex, TgMIC3-MIC8 (5, 6), are individually dispensable, the generation of double knock-outs for TgMIC1 and TgMIC3 renders the parasites avirulent in vivo, demonstrating functional synergy between these complexes (7). Deletion of the mic1 gene in T. gondii also confirmed the specific and critical role played by TgMIC1 in host cell attachment and invasion in vitro.Micronemal proteins have a modular structure with common themes in domain organization, for example many possess thrombospondin type-1 repeat domains (TSR1), 4 apple (or PAN) domains, and epidermal growth factor-like (EGF) domains (8). A schematic representation of the organization within the TgMIC4-MIC1-MIC6 complex is depicted in Fig. 1. Tg...

The Escherichia coli DNA repair enzyme AlkB is a 2-oxoglutarate (2OG)-dependent Fe(2+) binding dioxygenase that removes methyl lesions from DNA and RNA. To date, nine human AlkB homologues are known: ABH1 to ABH8 and the obesity-related FTO. Similar to AlkB, these homologues exert their activity on nucleic acids, although for some homologues the biological substrate remains to be identified. 2OG dioxygenases require binding of the cofactors Fe(2+) and 2OG in the active site to form a catalytically competent complex. We present a structural analysis of AlkB using NMR, fluorescence, and CD spectroscopy to show that AlkB is a dynamic protein exhibiting different folding states. In the absence of the cofactors Fe(2+) and 2OG, apoAlkB is a highly dynamic protein. Binding of either Fe(2+) or 2OG alone does not significantly affect the protein dynamics. Formation of a fully folded and catalytically competent holoAlkB complex only occurs when both 2OG and Fe(2+) are bound. These findings provide the first insights into protein folding of 2OG-dependent dioxygenases. A role for protein dynamics in the incorporation of the metal cofactor is discussed.

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