CABI:20153174020Understanding how plants are constructed - i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals - is essential for modeling plant growth, carbon stocks, and energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass And Allometry Database (BAAD) for woody plants. The BAAD contains 259634 measurements collected in 176 different studies, from 21084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at the time of publication. Thus, the BAAD contains data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) plants from 0.01-100 m in height were included; and (iv) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed sub-sampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem cross-section including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation

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Deer overabundance reduces forest groundlayer vegetation and can cause cascading impacts on a forest ecosystem. To predict these effects, we must elucidate the relationship between deer density and the status of ground-layer vegetation. This relationship was studied in the Boso Peninsula, where the deer population density exhibits a clear geographical gradient. We examined species richness and cover of ground-layer vegetation at several cedar plantations and hardwood forests in the Boso Peninsula. We also examined whether deer impacts were altered by light condition, soil water content and forest type (cedar and hardwood). Species richness of ground-layer vegetation was maximized at an intermediate level of deer density, suggesting an intermediate disturbance effect. This phenomenon was compatible with the observation that evergreen species, which were competitive dominants, decreased with increasing deer density, whereas less competitive deciduous species increased until herbivory was intermediate. As deer density increased, cover of ground-layer vegetation gradually decreased, but species unpalatable to deer increased in abundance, suggesting indirect positive effects of deer for unpalatable species. Cedar plantations tended to have greater species richness and ground-layer cover than hardwood forests with similar deer levels. Canopy openness, an indicator of light conditions, increased species richness of hardwood forests and ground-layer cover of cedar plantations, even under deer herbivory. Topographic wetness index, an indicator of soil water content, significantly increased the groundlayer cover of cedar plantations under deer herbivory. These results emphasize the importance of environmental productivity and forest type in the management of ground-layer vegetation experiencing deer overabundance.

To estimate the aboveground biomass of tropical secondary forests dominated by pioneer species, allometric equations to relate diameter at breast height with the dry mass of the aboveground organs of several pioneer species were developed. The aboveground biomass of secondary forests was estimated using four methods based on the allometric equations. Biomass estimated with an allometric equation for all species combined was equivalent to that estimated with species-specific allometric equations. However, the estimated biomass based on a general-purpose allometric equation was substantially higher than that using other allometric equations. The allometric equation for all species combined is suitable for estimating the biomass of a secondary forest from the view points of accuracy and labor.

Aluminum (Al) is a harmful element that rapidly inhibits the elongation of plant roots in acidic soils. The release of organic anions explains Al resistance in annual crops, but the mechanisms that are responsible for superior Al resistance in some woody plants remain unclear. We examined cell properties at the surface layer of the root apex in the camphor tree (Cinnamomum camphora) to understand its high Al resistance mechanism. Exposure to 500 mM Al for 8 d, more than 20-fold higher concentration and longer duration than what soybean (Glycine max) can tolerate, only reduced root elongation in the camphor tree to 64% of the control despite the slight induction of citrate release. In addition, Al content in the root apices was maintained at low levels. Histochemical profiling revealed that proanthocyanidin (PA)-accumulating cells were present at the adjacent outer layer of epidermis cells at the root apex, having distinctive zones for cell division and the early phase of cell expansion. Then the PA cells were gradually detached off the root, leaving thin debris behind, and the root surface was replaced with the elongating epidermis cells at the 3-to 4-mm region behind the tip. Al did not affect the proliferation of PA cells or epidermis cells, except for the delay in the start of expansion and the accelerated detachment of the former. In soybean roots, the innermost lateral root cap cells were absent in both PA accumulation and active cell division and failed to protect the epidermal cell expansion at 25 mM Al. These results suggest that transient proliferation and detachment of PA cells may facilitate the expansion of epidermis cells away from Al during root elongation in camphor tree.