Rivers are important ecosystems under continuous anthropogenic stresses. The hyporheic zone is a ubiquitous, reactive interface between the main channel and its surrounding sediments along the river network. We elaborate on the main physical, biological, and biogeochemical drivers and processes within the hyporheic zone that have been studied by multiple scientific disciplines for almost half a century. These previous efforts have shown that the hyporheic zone is a modulator for most metabolic stream processes and serves as a refuge and habitat for a diverse range of aquatic organisms. It also exerts a major control on river water quality by increasing the contact time with reactive environments, which in turn results in retention and transformation of nutrients, trace organic compounds, fine suspended particles, and microplastics, among others. The paper showcases the critical importance of hyporheic zones, both from a scientific and an applied perspective, and their role in ecosystem services to answer the question of the manuscript title. It identifies major research gaps in our understanding of hyporheic processes. In conclusion, we highlight the potential of hyporheic restoration to efficiently manage and reactivate ecosystem functions and services in river corridors.

Exchange processes of surface and groundwater are important for the management of water quantity and quality as well as for the ecological functioning. In contrast to most numerical simulations using coupled models to investigate these processes, we present a novel integral formulation for the sediment-water-interface. The computational fluid dynamics (CFD) model OpenFOAM was used to solve an extended version of the three-dimensional Navier–Stokes equations which is also applicable in non-Darcy-flow layers. Simulations were conducted to determine the influence of ripple morphologies and surface hydraulics on the flow processes within the hyporheic zone for a sandy and for a gravel sediment. In- and outflowing exchange fluxes along a ripple were determined for each case. The results indicate that larger grain size diameters, as well as ripple distances, increased hyporheic exchange fluxes significantly. For higher ripple dimensions, no clear relationship to hyporheic exchange was found. Larger ripple lengths decreased the hyporheic exchange fluxes due to less turbulence between the ripples. For all cases with sand, non-Darcy-flow was observed at an upper layer of the ripple, whereas for gravel non-Darcy-flow was recognized nearly down to the bottom boundary. Moreover, the sediment grain sizes influenced also the surface water flow significantly.

Transport processes that lead to exchange of mass between surface water and groundwater play a significant role for the ecological functioning of aquatic systems, for hydrological processes and for biogeochemical transformations. In this study, we present a novel integral modeling approach for flow and transport at the sediment-water interface. The model allows us to simultaneously simulate turbulent surface and subsurface flow and transport with the same conceptual approach. For this purpose, a conservative transport equation was implemented to an existing approach that uses an extended version of the Navier-Stokes equations. Based on previous flume studies which investigated the spreading of a dye tracer under neutral, losing and gaining flow conditions the new solver is validated. Tracer distributions of the experiments are in close agreement with the simulations. The simulated flow paths are significantly affected by in-and outflowing groundwater flow. The highest velocities within the sediment are found for losing condition, which leads to shorter residence times compared to neutral and gaining conditions. The largest extent of the hyporheic exchange flow is observed under neutral condition. The new solver can be used for further examinations of cases that are not suitable for the conventional coupled models, for example, if Reynolds numbers are larger than 10. Moreover, results gained with the integral solver provide high-resolution information on pressure and velocity distributions at the rippled streambed, which can be used to improve flow predictions. This includes the extent of hyporheic exchange under varying ambient groundwater flow conditions.

Computational fluid dynamics (CFD) is gaining an increasing importance in the field of hydraulic engineering. This publication presents different application examples of a two-phase approach as implemented in the open source software OpenFOAM. The chosen approach is based on the volume of fluid method focusing on the simulation of flow in closed conduits.Three examples are presented: single-phase flow over a ground sill and free surface flow over a hill as well as complex free surface flow in a sewer model. The first example compares the results of different RANS turbulence models with experimental results. The results of the second example are compared with an analytical solution. In the last example the behaviour of the free surface flow is compared with the results of a model test and existing simulations using a simplified, open channel geometry for the closed conduit. For the examples analysed, the two-phase approach provides stable and reliable results.

This study presents a novel high-resolution simulation of free-surface flow and tracer retention over a streambed with ripples based on varying ripple morphologies, surface hydraulics and the transport of a tracer pulse from surface water to surface dead zone. For the simulations, the computational fluid dynamics (CFD) model OpenFOAM was used to solve the threedimensional Navier-Stokes equations in combination with an implemented transport equation. Pressure gradients at the streambed were used to account for hyporheic exchange, assuming water flow from high pressure zones to low pressure zones. Flow velocities, ripple sizes and spacing showed to significantly affect these pressure gradients, but also the transport of a passive tracer at the streambed, which was not investigated so far. Due to the velocity field, large parts of the tracer mass were transported alongside the main stream above the ripples. Tracer mass reaching the space between the ripples was temporarily retained due to low velocities and recirculations. It was shown that the retention is depending on the ripple size and space between the ripples as well as on the flow velocity. Decreasing ripple sizes and higher flow velocities lead to a smaller tracer retention. Furthermore we showed that the ripple length to height ratio controls the generation of recirculation zones which affect the residence time of the tracer significantly. Ripple spacing leads to temporarily higher tracer concentration at the streambed, but smaller tracer retention. We conclude that the impact of the streambed morphology on the hydraulics in combination with tracer retention should be addressed for a comprehensive understanding of compound movement, exchange and transformation within the hyporheic zone.