Novel species of fungi described in this study include those from various countries as follows: Algeria, Phaeoacremonium adelophialidum from Vitis vinifera. Antarctica, Comoclathris antarctica from soil. Australia, Coniochaeta salicifolia as endophyte from healthy leaves of Geijera salicifolia, Eremothecium peggii in fruit of Citrus australis, Microdochium ratticaudae from stem of Sporobolus natalensis, Neocelosporium corymbiae on stems of Corymbia variegata, Phytophthora kelmanii from rhizosphere soil of Ptilotus pyramidatus, Pseudosydowia backhousiae on living leaves of Backhousia citriodora, Pseudosydowia indooroopillyensis, Pseudosydowia louisecottisiae and Pseudosydowia queenslandica on living leaves of Eucalyptus sp. Brazil, Absidia montepascoalis from soil. Chile, Ilyonectria zarorii from soil under Maytenus boaria. Costa Rica, Colletotrichum filicis from an unidentified fern. Croatia, Mollisia endogranulata on deteriorated hardwood. Czech Republic, Arcopilus navicularis from tea bag with fruit tea, Neosetophoma buxi as endophyte from Buxus sempervirens, Xerochrysium bohemicum on surface of biscuits with chocolate glaze and filled with jam. France, Entoloma cyaneobasale on basic to calcareous soil, Fusarium aconidiale from Triticum aestivum, Fusarium juglandicola from buds of Juglans regia. Germany, Tetraploa endophytica as endophyte from Microthlaspi perfoliatum roots. India, Castanediella ambae on leaves of Mangifera indica, Lactifluus kanadii on soil under Castanopsis sp., Penicillium uttarakhandense from soil. Italy, Penicillium ferraniaense from compost. Namibia, Bezerromyces gobabebensis on leaves of unidentified succulent, Cladosporium stipagrostidicola on leaves of Stipagrostis sp., Cymostachys euphorbiae on leaves of Euphorbia sp., Deniquelata hypolithi from hypolith under a rock, Hysterobrevium walvisbayicola on leaves of unidentified tree, Knufia hypolithi and Knufia walvisbayicola from hypolith under a rock, Lapidomyces stipagrostidicola on leaves of Stipagrostis sp., Nothophaeotheca mirabibensis (incl. Nothophaeotheca gen. nov.) on persistent inflorescence remains of Blepharis obmitrata, Paramyrothecium salvadorae on twigs of Salvadora persica, Preussia procaviicola on dung of Procavia sp., Sordaria equicola on zebra dung, Volutella salvadorae on stems of Salvadora persica. Netherlands, Entoloma ammophilum on sandy soil, Entoloma pseudocruentatum on nutrient poor (acid) soil, Entoloma pudens on plant debris, amongst grasses. New Zealand, Amorocoelophoma neoregeliae from leaf spots of Neoregelia sp., Aquilomyces metrosideri and Septoriella callistemonis from stem discolouration and leaf spots of Metrosideros sp., Cadophora neoregeliae from leaf spots of Neoregelia sp., Flexuomyces asteliae (incl. Flexuomyces gen. nov.) and Mollisia asteliae from leaf spots of Astelia chathamica, Ophioceras freycinetiae from leaf spots of Freycinetia banksii, Phaeosphaeria caricis-sectae from leaf spots of Carex secta. Norway, Cuphophyllus flavipesoides on soil in semi-natural grassland, Entoloma coracis on soil in calcareous Pinus and Tilia forests, Entoloma cyaneolilacinum on soil semi-natural grasslands, Inocybe norvegica on gravelly soil. Pakistan, Butyriboletus parachinarensis on soil in association with Quercus baloot. Poland, Hyalodendriella bialowiezensis on debris beneath fallen bark of Norway spruce Picea abies. Russia, Bolbitius sibiricus on а moss covered rotting trunk of Populus tremula, Crepidotus wasseri on debris of Populus tremula, Entoloma isborscanum on soil on calcareous grasslands, Entoloma subcoracis on soil in subalpine grasslands, Hydropus lecythiocystis on rotted wood of Betula pendula, Meruliopsis faginea on fallen dead branches of Fagus orientalis, Metschnikowia taurica from fruits of Ziziphus jujube, Suillus praetermissus on soil, Teunia lichenophila as endophyte from Cladonia rangiferina. Slovakia, Hygrocybe fulgens on mowed grassland, Pleuroflammula pannonica from corticated branches of Quercus sp. South Africa, Acrodontium burrowsianum on leaves of unidentified Poaceae, Castanediella senegaliae on dead pods of Senegalia ataxacantha, Cladophialophora behniae on leaves of Behnia sp., Colletotrichum cliviigenum on leaves of Clivia sp., Diatrype dalbergiae on bark of Dalbergia armata, Falcocladium heteropyxidicola on leaves of Heteropyxis canescens, Lapidomyces aloidendricola as epiphyte on brown stem of Aloidendron dichotomum, Lasionectria sansevieriae and Phaeosphaeriopsis sansevieriae on leaves of Sansevieria hyacinthoides, Lylea dalbergiae on Diatrype dalbergiae on bark of Dalbergia armata, Neochaetothyrina syzygii (incl. Neochaetothyrina gen. nov.) on leaves of Syzygium chordatum, Nothophaeomoniella ekebergiae (incl. Nothophaeomoniella gen. nov.) on leaves of Ekebergia pterophylla, Paracymostachys euphorbiae (incl. Paracymostachys gen. nov.) on leaf litter of Euphorbia ingens, Paramycosphaerella pterocarpi on leaves of Pterocarpus angolensis, Paramycosphaerella syzygii on leaf litter of Syzygium chordatum, Parateichospora phoenicicola (incl. Parateichospora gen. nov.) on leaves of Phoenix reclinata, Seiridium syzygii on twigs of Syzygium chordatum, Setophoma syzygii on leaves of Syzygium sp., Starmerella xylocopis from larval feed of an Afrotropical bee Xylocopa caffra, Teratosphaeria combreti on leaf litter of Combretum kraussii, Teratosphaericola leucadendri on leaves of Leucadendron sp., Toxicocladosporium pterocarpi on pods of Pterocarpus angolensis. Spain, Cortinarius bonachei with Quercus ilex in calcareus soils, Cortinarius brunneovolvatus under Quercus ilex subsp. ballota in calcareous soil, Extremopsis radicicola (incl. Extremopsis gen. nov.) from root-associated soil in a wet heathland, Russula quintanensis on acidic soils, Tubaria vulcanica on volcanic lapilii material, Tuber zambonelliae in calcareus soil. Sweden, Elaphomyces borealis on soil under Pinus sylvestris and Betula pubescens. Tanzania, Curvularia tanzanica on inflorescence of Cyperus aromaticus. Thailand, Simplicillium niveum on Ophiocordyceps camponoti-leonardi on underside of unidentified dicotyledonous leaf. USA, Calonectria californiensis on leaves of Umbellularia californica, Exophiala spartinae from surface sterilised roots of Spartina alterniflora, Neophaeococcomyces oklahomaensis from outside wall of alcohol distillery. Vietnam, Fistulinella aurantioflava on soil. Morphological and culture characteristics are supported by DNA barcodes.
Background and aims Dieback is pervasive in many populations of invasive woody weeds globally. Previous studies on dieback have focused on specific potential causative biotic agents, but most cases remain unexplained. The potential role of endophytic microbial communities in dieback, including the relative importance of endophytes with pathogenic or protective capabilities, remains poorly studied. We tested whether changes in archaeal, bacterial and fungal endophyte community structure is associated with dieback occurrence in the invasive, leguminous tree, Parkinsonia aculeata L. (parkinsonia). Methods We sampled roots, stems and stem tips from healthy and dieback-affected parkinsonia and conducted terminal restriction fragment length polymorphism (T-RFLP) analysis on DNA extracted from these samples using domain-specific primers for archaea, bacteria and higher fungi.Results Microbial community composition strongly differed with parkinsonia disease status (archaea, bacteria and fungi) and plant part (archaea and fungi). Plant part and disease status effects were strongest in archaea. We also found evidence implicating both pathogenic and potentially protective endophytes in the onset of dieback. Conclusions This is the first study that has shown significant associations between changes in endophyte community composition and dieback presence. Our results highlight the complexity of those changes and provide support for the hypothesis that diverse pathogenic and protective endophytes may be implicated in dieback.
Novel species of fungi described in this study include those from various countries as follows: Australia, Agaricus albofoetidus, Agaricus aureoelephanti and Agaricus parviumbrus on soil, Fusarium ramsdenii from stem cankers of Araucaria cunninghamii, Keissleriella sporoboli from stem of Sporobolus natalensis, Leptosphaerulina queenslandica and Pestalotiopsis chiaroscuro from leaves of Sporobolus natalensis, Serendipita petricolae as endophyte from roots of Eriochilus petricola, Stagonospora tauntonensis from stem of Sporobolus natalensis, Teratosphaeria carnegiei from leaves of Eucalyptus grandis × E. camaldulensis and Wongia ficherai from roots of Eragrostis curvula. Canada, Lulworthia fundyensis from intertidal wood and Newbrunswickomyces abietophilus (incl. Newbrunswickomyces gen. nov.) on buds of Abies balsamea. Czech Republic, Geosmithia funiculosa from a bark beetle gallery on Ulmus minor and Neoherpotrichiella juglandicola (incl. Neoherpotrichiella gen. nov.) from wood of Juglans regia. France, Aspergillus rouenensis and Neoacrodontium gallica (incl. Neoacrodontium gen. nov.) from bore dust of Xestobium rufovillosum feeding on Quercus wood, Endoradiciella communis (incl. Endoradiciella gen. nov.) endophytic in roots of Microthlaspi perfoliatum and Entoloma simulans on soil. India, Amanita konajensis on soil and Keithomyces indicus from soil. Israel, Microascus rothbergiorum from Stylophora pistillata. Italy, Calonarius ligusticus on soil. Netherlands, Appendopyricularia juncicola (incl. Appendopyricularia gen. nov.), Eriospora juncicola and Tetraploa juncicola on dead culms of Juncus effusus, Gonatophragmium physciae on Physcia caesia and Paracosmospora physciae (incl. Paracosmospora gen. nov.) on Physcia tenella, Myrmecridium phragmitigenum on dead culm of Phragmites australis, Neochalara lolae on stems of Pteridium aquilinum, Niesslia nieuwwulvenica on dead culm of undetermined Poaceae, Nothodevriesia narthecii (incl. Nothodevriesia gen. nov.) on dead leaves of Narthecium ossifragum and Parastenospora pini (incl. Parastenospora gen. nov.) on dead twigs of Pinus sylvestris. Norway, Verticillium bjoernoeyanum from sand grains attached to a piece of driftwood on a sandy beach. Portugal, Collybiopsis cimrmanii on the base of living Quercus ilex and amongst dead leaves of Laurus and herbs. South Africa, Paraproliferophorum hyphaenes (incl. Paraproliferophorum gen. nov.) on living leaves of Hyphaene sp. and Saccothecium widdringtoniae on twigs of Widdringtonia wallichii. Spain, Cortinarius dryosalor on soil, Cyphellophora endoradicis endophytic in roots of Microthlaspi perfoliatum, Geoglossum laurisilvae on soil, Leptographium gemmatum from fluvial sediments, Physalacria auricularioides from a dead twig of Castanea sativa, Terfezia bertae and Tuber davidlopezii in soil. Sweden, Alpova larskersii, Inocybe alpestris and Inocybe boreogodeyi on soil. Thailand, Russula banwatchanensis, Russula purpureoviridis and Russula lilacina on soil. Ukraine, Nectriella adonidis on overwintered stems of Adonis vernalis. USA, Microcyclus jacquiniae from living leaves of Jacquinia keyensis and Penicillium neoherquei from a minute mushroom sporocarp. Morphological and culture characteristics are supported by DNA barcodes.
Phytophthora species have caused the decline and dieback of multiple tree species in Australia and around the world. Dieback in invasive trees in Australia has been observed for decades, motivating research into the potential causes of dieback to be used for biological control of these invasive species. Despite wide-ranging and ongoing research into invasive plant dieback, Phytophthora species have been largely ignored as potential causal agents of dieback, with the focus more on latent fungal pathogens living as endophytes. We conducted the first survey of Phytophthora and other oomycetes to determine their association with dieback of the invasive tree, Parkinsonia aculeata L. (Fabaceae). Using zoospore baiting, we recovered 37 oomycete isolates from roots and soil of healthy and dieback-affected P. aculeata in Kununurra, Western Australia and Charters Towers, Queensland. Using molecular taxonomy, we identified ten unique oomycete taxa, predominantly composed of Phytophthora palmivora, Ph. nicotianae and Phytopythium vexans. Parkinsonia dieback occurs across multiple climatic zones including those experiencing severe drought. We recovered fewer oomycete isolates from soil and roots in drought-affected Charters Towers than Kununurra, which had experienced recent rainfall. This may be because oomycetes require soil moisture for the dispersal of zoospores. None of the genotypes identified were consistently isolated from dieback-affected trees suggesting that any association with parkinsonia dieback may be localised. More extensive surveys and pathogenicity screenings of isolated Powered by Editorial Manager® and ProduXion Manager® from Aries Systems Corporationoomycetes are required to evaluate their role in the parkinsonia dieback phenomenon.Response to Reviewers: To the Editor, Thank-you for accepting our submission "First report of Oomycetes associated with the invasive tree Parkinsonia aculeata (Family: Fabaceae)".I have reviewed and made the changes you suggested in the manuscript, such as changing the abbreviated "QLD" to "Queensland" throughout, and fixing any ambiguity with the "Phytophthora" vs. "Pythium" genera using abbreviations "Ph." and "Py." where appropriate (I.e. not at the start of sentences where I have instead written the genus out in full). I also changed mention of the study plant, "Parkinsonia" to "P. aculeata", removed Figure 2 and have adjusted the orders of Figure 3 and 4.Please contact me should you require anything further via my contact details below. Phytophthora species have caused the decline and dieback of multiple tree species in 22
There are five closely related Sporobolus species, collectively known as weedy Sporobolus grasses (WSG) or the rat’s tail grasses. They are fast growing, highly competitive, unpalatable weeds of pastures, roadsides and woodlands. An effective biological control agent would be a welcomed alternative to successive herbicide application and manual removal methods. This study describes the initial exploratory phase of isolating and identifying native Australian microfungi associated with WSG, prior to evaluating their efficacy as inundative biological control agents. Accurate species-level identification of plant-pathogenic microfungi associated with WSG is an essential first step in the evaluation and prioritisation of pathogenicity bioassays. Starting with more than 79 unique fungal morphotypes isolated from diseased Sporobolus grasses in Queensland, Australia, we employed multi-locus phylogenetic analyses to classify these isolates into 54 fungal taxa. These taxa belong to 22 Ascomycete families (12 orders), of which the majority fall within the Pleosporales (>24 taxa in 7 families). In the next phase of the study, the putative species identities of these taxa will allow us to prioritise those which are likely to be pathogenic based on existing literature and their known ecological roles. This study represents the first step in a systematic, high-throughput approach to finding potential plant pathogenic biological control agents.
In Australia there are five weedy Sporobolus grass (WSG) species that heavily impact agricultural industries and native biodiversity. WSG have been the subject of several efforts to find host-specific pathogens with potential for classical and inundative biocontrol. Most of these studies are only discussed in unpublished reports or theses, so in this paper we synthesise the available peer-reviewed and ‘grey’ literature that discuss classical, augmentative and inundative biocontrol of WSG in Australia using fungal pathogens. We consider the hundreds of fungal pathogens previously isolated from Sporobolus hosts on an international and national scale. Of the pathogens investigated for WSG biocontrol previously, the only promising classical biocontrol agent was a smut fungus (Ustilago sporoboli-indici) from South Africa that is now present in Queensland and New South Wales, Australia. Its method of introduction to Australia is unknown. We hence discuss the history and potential for augmentative biocontrol of WSG using U. sporoboli-indici. Next, we summarise inundative biocontrol efforts. Several ascomycetes isolated from Australian WSG populations have been tested in this regard, including species of Nigrospora, Fusarium, Curvularia, Microdochium, Pestalotiopsis, and Neopestalotiopsis. However, a lack of host-specificity or efficacy subsequently precluded their further development, and potential improvements on those inundative biocontrol studies are discussed. Finally, we discuss a collection of endemic fungal taxa isolated from diseased Sporobolus in Australia, which are currently undergoing virulence, pathogenicity, and host-specificity screening as potential inundative biocontrol agents for WSG. Our intention is that the lessons learned from previous studies and summarised herein, will support ongoing development of WSG biocontrol agents in Australia, and more broadly, weed biocontrol using plant pathogens anywhere in the world.
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