The gekkonid genus Cyrtodactylus is the third most speciose vertebrate genus in the world, containing well over 300 species that collectively range from South Asia to Melanesia across some of the most diverse landscapes and imperiled habitats on the planet. A genus-wide phylogeny of the group has never been presented because researchers working on different groups were using different genetic markers to construct phylogenies that could not be integrated. We present here Maximum likelihood and Bayesian inference mitochondrial and mito-nuclear phylogenies incorporating of 310 species that include dozens of species that had never been included in a genus-wide analysis. Based on the mitochondrial phylogeny, we partition Cyrtodactylus into 31 well-supported monophyletic species groups which, if used as recommended herein, will increase the information content of future integrative taxonomic analyses that continue to add new species to this genus at an ever-increasing annual rate. Data presented here reiterate the outcome of several previous studies indicating that Cyrtodactylus comprises an unprecedented number of narrow-range endemics restricted to single mountain tops, small islands, or karst formations that still remain unprotected. This phylogeny can provide a platform for various comparative ecological studies that can be integrated with conservation management programs across the broad diversity of landscapes and habitats occupied by this genus. Additionally, these data indicate that the true number of Cyrtodactylus remains substantially underrepresented.
Karstic landscapes are immense reservoirs of biodiversity and range-restricted endemism. Nowhere is this more evident than in the world’s third-largest vertebrate genus Cyrtodactylus (Gekkonidae) which contains well over 300 species. A stochastic character mapping analysis of 10 different habitat preferences across a phylogeny containing 345 described and undescribed species recovered a karst habitat preference occurring in 25.0% of the species, whereas that of the other eight specific habitat preferences occurred in only 0.2–11.0% of the species. The tenth category—general habitat preference—occurred in 38.7% of the species and was the ancestral habitat preference for Cyrtodactylus and the ultimate origin of all other habitat preferences. This study echoes the results of a previous study illustrating that karstic landscapes are generators of species diversity within Cyrtodactylus and not simply “imperiled arks of biodiversity” serving as refugia for relics. Unfortunately, the immense financial returns of mineral extraction to developing nations largely outweighs concerns for biodiversity conservation, leaving approximately 99% of karstic landscapes with no legal protection. This study continues to underscore the urgent need for their appropriate management and conservation. Additionally, this analysis supports the monophyly of the recently proposed 31 species groups and adds one additional species group.
A new species of Cnemaspis Strauch, 1887 is described from Nilgala Savannah Forest in Sri Lanka. The new species is diagnosed from all other congeners by the following suite of characters: small body size (SVL< 33 mm), dorsal scales on trunk homogeneous, one pair of post mentals separated by a single small chin scale, ventral scales on trunk smooth, subimbricate, 17–19 scales across the belly. Subdigitals scansors smooth, entire, unnotched; lamellae under digit IV of pes 17 –18. Males with femoral pores on each thigh but lacking precloacal pores. Median row of subcaudals smooth, subimbricate, enlarged and in an irregular series of subhexagonal scales. This new species had been previously confused with Cnemaspis alwisi Wickramasinghe & Munidradasa, 2007. The new species differs from Cnemaspis alwisi by having 122–129 ventral scales (versus 146–152), 7–8 supralabials (versus 8–10), and relatively shorter SVL ranging between 31.5–32.9 mm (versus 37.8–39.9 mm). Further, the new species is genetically divergent from Cnemaspis alwisi, the species that it closely resembles by 13.5% and 7.8% from its sister species in the ND2 gene. The present discovery highlights the need for dedicated herpetofaunal explorations in Sri Lanka, especially the intermediate bioclimatic zone and associated cave systems and rock outcrops.
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