Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN.

Fine root dynamics is a main driver of soil carbon stocks, particularly in tropical forests, yet major uncertainties still surround estimates of fine root production and turnover. This lack of knowledge is largely due to the fact that studying root dynamics in situ, particularly deep in the soil, remains highly challenging. We explored the interactions between fine root dynamics, soil depth, and rainfall in mature rubber trees (Hevea brasiliensis Müll. Arg.) exposed to sub-optimal edaphic and climatic conditions. A root observation access well was installed in northern Thailand to monitor root dynamics along a 4.5 m deep soil profile. Image-based measurements of root elongation and lifespan of individual roots were carried out at monthly intervals over 3 years. Soil depth was found to have a significant effect on root turnover. Surprisingly, root turnover increased with soil depth and root half-life was 16, 6–8, and only 4 months at 0.5, 1.0, 2.5, and 3.0 m deep, respectively (with the exception of roots at 4.5 m which had a half-life similar to that found between depths of 1.0 and 2.5 m). Within the first two meters of the soil profile, the highest rates of root emergence occurred about 3 months after the onset of the rainy season, while deeper in the soil, root emergence was not linked to the rainfall pattern. Root emergence was limited during leaf flushing (between March and May), particularly within the first two meters of the profile. Between soil depths of 0.5 and 2.0 m, root mortality appeared independent of variations in root emergence, but below 2.0 m, peaks in root emergence and death were synchronized. Shallow parts of the root system were more responsive to rainfall than their deeper counterparts. Increased root emergence in deep soil toward the onset of the dry season could correspond to a drought acclimation mechanism, with the relative importance of deep water capture increasing once rainfall ceased. The considerable soil depth regularly explored by fine roots, even though significantly less than in surface layers in terms of root length density and biomass, will impact strongly the evaluation of soil carbon stocks.

Effects of soil and atmospheric drought on whole-tree transpiration (E(T)), leaf water potential (Ψ(L)) and whole-tree hydraulic conductance (K(T)) were investigated in mature rubber trees (Hevea brasiliensis, clone RRIM 600) during the full canopy stage in the rainy season in a drought-prone area of northeast Thailand. Under well-watered soil conditions, transpiration was tightly regulated in response to high evaporative demand, i.e., above reference evapotranspiration (ET(0)) ~2.2 mm day(-1) or maximum vapor pressure deficit ~1.8 kPa. When the trees experienced intermittent soil drought E(T) decreased sharply when relative extractable water in the top soil was < 0.4. The midday leaf water potential (Ψ(md)) on sunny days did not change as a function of soil drought and remained stable at approximately - 1.95 MPa, i.e., displaying isohydric behavior. The decrease in E(T) was mainly due to the change in K(T). K(T) remained constant over a wide range of environmental conditions and decreased sharply at low soil water availability. A simple hydraulic model incorporating critical minimum water potential and the response of whole-tree hydraulic conductance to relative extractable water correctly simulated patterns of transpiration over 6 months. We conclude that an explicit and simplified framework of hydraulic limitation hypothesis was sufficient to describe water use regulation of a mature rubber tree stand in water-limited conditions. Given the complexity of constraints in the soil-plant-atmosphere pathway, our results confirm the relevance of this approach to synthesize the overall behavior of trees under drought.

The transient thermal dissipation (TTD) method developed by Do and Rocheteau (2002b) is a close evolution of the original constant thermal dissipation (CTD) method of Granier (1985). The TTD method has the advantage of limiting the influence of passive natural temperature gradients and of yielding more stable zero-flux references at night. By analogy with the CTD method, the transient method was first calibrated on synthetic porous material (sawdust) on the assumption that the relationship was independent of the woody species. Here, our concern was to test the latter hypothesis with a 10-min heating time in three tropical species: Hevea brasiliensis Müll. Arg., Mangifera indica L. and Citrus maxima Merr. A complementary objective was to compare the field estimates of daily transpiration for mature rubber trees with estimates based on a simplified soil water balance in the dry season. The calibration experiments were carried out in the laboratory on cut stems using an HPFM device and gravimetric control of water flow up to 5 L dm(-2) h(-1). Nineteen response curves were assessed on fully conductive xylem, combining 11 cut stems and two probes. The field evaluation comprised five periods from November 2007 to February 2008. Estimates of daily transpiration from the measurement of sap flow were based on the 41 sensors set up on 11 trees. Soil water depletion was monitored by neutron probe and 12 access tubes to a depth of 1.8 m. The calibrations confirmed that the response of the transient thermal index to flow density was independent of the woody species that were tested. The best fit was a simple linear response (R(2) = 0.88, n = 276 and P < 0.0001). The previous calibration performed by Do and Rocheteau (2002b) on sawdust fell within the variability of the multi-species calibration; however, there were substantial differences with the average curve at extreme flow rates. Field comparison with soil water depletion in the dry season validated to a reasonable extent the absolute estimates of transpiration acquired with the 10-min TTD method. In conclusion, evidence for the independence of calibration from woody species and the simple linear response of the thermal index strengthen the interest of the TTD method with 10-min heating.

Abstract. Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy and carbon budgets at the land-atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/). We harmonised and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well-represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks and remote sensing products to help increase our understanding of plant water use, plant responses to drought and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository ( https://doi.org/10.5281/zenodo.3971689, Poyatos et al., 2020a). The sapfluxnetr R package, designed to access, visualise and process SAPFLUXNET data is available from CRAN.

Comparisons of tree water relations between treatments, species and sites are facilitated by the use of simple and low-cost measurements of xylem sap flow rates. The transient thermal dissipation (TTD) method is a variant of the constant thermal dissipation (CTD) method of Granier. It has the advantages of limiting thermal interference and of saving electrical energy. Here, our concern was to test a new step towards simplicity and low cost: the applicability of the TTD method with a single probe, i.e., without a reference sensor, following a cycle of 10 min heating and 10 min cooling, and using the same thermal index and multi-species calibration previously assessed with a dual probe. First, the responses of the dual and single probes were compared in an artificial hydraulic column of sawdust in the laboratory over a complete range of flux densities, from 0.3 to 4.0 l dm⁻² h⁻¹. Second, diurnal kinetics were compared in a young tree with rapid changes in the sapwood reference temperature of up to 5 °C h⁻¹ for 5 consecutive days. With a relatively stable reference temperature, laboratory results showed that a single probe yielded the same temperature signal and thermal index as a dual probe for the full range of sap flux densities. Within the tree, the cooled temperature of the heated probe, linearly interpolated, proved to be an accurate indicator of the change in the reference temperature over time. Logically, the temperature signals and estimates of sap flux density with the single probe did not differ from the dual-sensor measurements when the cooled temperature was interpolated. Additionally, the responses of the thermal index, yielded in the hydraulic experiment with the sawdust column, fell within the variability of the multi-species calibration. This result supports the previous assessment of a non-species-specific calibration for the TTD method with diffuse porous media. In conclusion, our results showed that the TTD method can be directly applied with a single probe. Limitations and possible future progress are pointed out. This measurement system is probably the simplest technique currently available to measure xylem sap flow.

Organic amendments are believed to help increase the soil carbon storage and therefore improve soil quality, which may be important in the context of climate change. However, the added value of organic amendments for farmers must be clearly demonstrated in order to convince them of the utility of their use. The aims of this study were: (i) to investigate the impact on maize of compost and vermicompost combined with two levels (negligible and significant) of plant water stress; and (ii) to determine how the organic amendments affected the soil’s physical properties and maize productivity. Water stress levels were imposed by controlling the matric potential of soil columns in which cultivated soil characteristics was mimicked (10 cm topsoil with organic amendments, above a 50 cm subsoil without any inputs containing the majority of the roots). Plant and soil characteristics were monitored daily for 70 days. Our results show that the use of organic amendments is profitable for farmers as: (i) maize performances were increased in both moisture regimes; and (ii) the improvement was particularly striking in terms of yield. No additional benefits were measured when using vermicompost instead of compost. The data suggest that the improvement in plant characteristics did not result from increased water storage in the soils with organic amendments, but rather from better access to the water, resulting in faster root development in the macroporosity of the amended soils.

SUMMARYIn order to get the benefit of the growing world demand for natural rubber, Hevea brasiliensis is increasingly planted in drought-prone areas, such as in the southern part of northeast Thailand. Modelling can be a useful approach in identifying key points of improvement for rubber tree cultivation in such water-limited areas. The first objective of this study was to test the possibility of using the Water Nutrients and Light Capture in Agroforestry Systems (WaNuLCAS) model as an exploratory tool to simulate water use, growth and latex production in a pure stand on a daily basis. The second was to evaluate the relative accuracy of predictions with the current model version. Finally, the third aim of this study was to identify particular parameterisations that may be adapted to improve overall prediction quality. Model outputs were compared to measurements recorded in a mature rubber tree stand of RRIM 600 clones growing in the water-limited area of northeast Thailand. The period of analysis concerned seven months of full foliation, from May to November, including a severe drought spell. Whole-tree transpiration was estimated by xylem sap flow measurement from 11 trees. The results show that the model was able to simulate daily and seasonal change of soil water content, tree transpiration, girth increment and latex production within plausible ranges. However, under detailed scrutiny, the predictions show large inaccuracies compared to the observations: soil water content (determination coefficient (R2) = 0.461, relative root mean square error (RMSErel) = 35%), tree transpiration (R2 = 0.104, RMSErel = 94%), tree girth increment (R2 = 0.916, RMSErel = 208%) and latex production (R2 = 0.423, RMSErel = 169%). As soil water content was overestimated during the driest periods, no water stress was predicted and transpiration, growth and latex production were logically overestimated during such periods. However, tree transpiration was also largely overestimated in conditions of non-limiting soil water availability with high evaporative demand. Hence, two key points of parameterisation and improvement are identified for better simulation in our conditions: the soil water balance and particularly the ratio between water infiltration and run-off, and the regulation of transpiration under high evaporative demand. In conclusion, the WaNuLCAS model is usable as an exploratory model to simulate water use, growth and production for a pure rubber tree stand. However, in our conditions of much degraded soil and high evaporative demand, the modules of soil water balance and tree transpiration require particular parameterisations and improvement.