Mediterranean red-legged (Alectoris rufa) and rock (Alectoris graeca) partridge populations are affected by genetic pollution. The chukar partridge (Alectoris chukar), a species only partly native to Europe, is the most frequently introgressive taxon detected in the genome of hybrid partridges. Both theoretical (evolutionary) and practical (resources management) matters spur to get insight into the geographic origin of the A. chukar hybridizing swarm. The phenotypic A. rufa populations colonizing the easternmost part of the distribution range of this species, the islands of Elba (Italy) and Corsica (France), were investigated. The analysis of both mitochondrial (mtDNA: Cytochrome-b gene plus Control Region: 2,250 characters) and nuclear (Short Tandem Repeats, STR; Random Amplified Polymorphic DNA, RAPD) genomes of 25 wild (Elba) and 20 captive (Corsica) partridges, disclosed spread introgression of chukar origin also in these populations. All mtDNA haplotypes of Elba and Corsica partridges along with those we obtained from other A. rufa (total, n = 111: Italy,Spain, France) and A. graeca (n = 6, Italy), were compared with the mtDNA haplotypes of chukars (n = 205) sampled in 20 countries. It was found that the A. chukar genes detected in red-legged (n = 43) and rock partridges (n = 4) of Spain, France and Italy as well as in either introduced (Italy) or native (Greece, Turkey) chukars (n = 35) were all fromEastAsia. Hence, awelldefined geographic origin of the exotic chukar genes polluting the genome of native Mediterranean A. rufa and A. graeca (inter-specific level) as well as A. chukar (intra-specific level), was demonstrated
Recent years have seen considerable progress in applying single nucleotide polymorphisms (SNPs) to population genetics studies. However, relatively few have attempted to use them to study the genetic differentiation of wild bird populations and none have examined possible differences of exonic and intronic SNPs in these studies. Here, using 144 SNPs, we examined population genetic differentiation in the saker falcon (Falco cherrug) across Eurasia. The position of each SNP was verified using the recently sequenced saker genome with 108 SNPs positioned within the introns of 10 fragments and 36 SNPs in the exons of six genes, comprising MHC, MC1R and four others. In contrast to intronic SNPs, both Bayesian clustering and principal component analyses using exonic SNPs consistently revealed two genetic clusters, within which the least admixed individuals were found in Europe/central Asia and Qinghai (China), respectively. Pairwise D analysis for exonic SNPs showed that the two populations were significantly differentiated and between the two clusters the frequencies of five SNP markers were inferred to be influenced by selection. Central Eurasian populations clustered in as intermediate between the two main groups, consistent with their geographic position. But the westernmost populations of central Europe showed evidence of demographic isolation. Our work highlights the importance of functional exonic SNPs for studying population genetic pattern in a widespread avian species.
In September 2007 we visited distribution pole lines in the Mongolian steppe to access their risks to raptors. Distribution power lines in the Mongolian grasslands are used extensively by raptors. Nesting on utility poles also is common. Currently there is a trend to substitute older Russian-built wood pole electrical structures with Chinese-built concrete poles with grounded metal crossarms. Accordingly, both older distribution line sections constructed with wood poles and newer lines constructed with concrete poles were sampled. Although wood pole configurations can be quite lethal (one pole had 8 recent carcasses and had previously killed 26 birds), these configurations occurred relatively infrequently. In contrast, every inspected distribution concrete pole was potentially lethal. The concrete poles were built with grounded metal crossarms, resulting in greatly reduced phase-to-ground clearances. We inspected 527 concrete poles and detected 68 bird carcasses at pole bases. Although power lines can provide positive benefits for raptors, the trend to use concrete poles with metal crossarms in the Mongolian steppe outweighs positive benefits. If concrete poles are to be used in raptor habitat, alternative construction methods should be substituted, such as the use of suspended insulators.
North-eastern Mongolia is an important breeding area for the globally threatened White-naped Crane Grus vipio. We studied reproductive performance and the influence of factors related to livestock grazing on reproduction and nest-site selection of the White-naped Crane population in the Ulz river valley, north-eastern Mongolia in 2000 and 2001. In 2001, 42 territorial pairs were found in 270 km of river basin. Recruitment was 18-22% resulting in 0.5-0.6 juveniles per territorial pair. The years 2000 and 2001 were within a dry period and recruitment might have been below the long-term average. White-naped Crane nests were significantly associated with river basin sections containing shallow water-bodies. The number and extent of shallow water-bodies are likely to be a limiting factor for breeding population size. Nest-sites in waterbodies were selected for high nest concealment, but nests were initiated even when concealing vegetation was not available. Only 26% of nests were >90% concealed suggesting that appropriate cover was often not available. Nest-sites were also selected for low grazing intensity. No correlation was found between hatching or fledging success and nest concealment or grazing intensity. Brood-size of successful pairs was higher if the home range was ungrazed, but further investigations are needed to clarify whether this was caused by absence of livestock grazing or other factors. Both because of internationally important numbers and because of a potentially high reproductive output, the study area is of high importance for the species.
Aim Pleistocene climate and associated environmental changes have influenced phylogeographic patterns of many species. These not only depend on a species’ life history but also vary regionally. Consequently, populations of widespread species that occur in several biomes might display different evolutionary trajectories. We aimed to identify regional drivers of diversification in the common pheasant, a widely distributed ecological generalist. Location Asia. Taxon Common pheasant Phasianus colchicus. Methods Using a comprehensive geographical sampling of 204 individuals from the species’ entire range genotyped at seven nuclear and two mitochondrial loci, we reconstructed spatio‐temporal diversification and demographic history of the common pheasant. We applied Bayesian phylogenetic inference to describe phylogeographic structure, generated a species tree and inferred demographic history within and migration between lineages. Moreover, to establish a taxonomic framework, we conducted a species delimitation analysis. Results The common pheasant diversified during the Late Pleistocene into eight distinct lineages. It originated at the edge of the Qinghai–Tibetan plateau and spread to East and Central Asia. Only the widely distributed lowland lineage of East Asia displayed recent range expansion. Greater phylogeographic structure was identified elsewhere, with lineages showing no sign of recent demographic changes. One lineage in south‐central China is the result of long‐term isolation within a climatically stable but topographically complex region. In lineages from arid Central Asia and China, range expansions were impeded by repeated population fragmentation during dry glacial periods and by recent aridification. Main conclusions Spatio‐temporal phylogeographic frameworks of widespread taxa such as the common pheasant provide valuable opportunities to identify divergent drivers of regional diversification. Our results suggest that diversification and population histories in the eight distinct evolutionary lineages were shaped by regionally variable effects of past climate and associated environmental changes. The evolutionary history of the common pheasant is best reflected by its being split into three species.
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